| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is btuB [H]
Identifier: 120599155
GI number: 120599155
Start: 2709924
End: 2712779
Strand: Direct
Name: btuB [H]
Synonym: Sputw3181_2351
Alternate gene names: 120599155
Gene position: 2709924-2712779 (Clockwise)
Preceding gene: 120599154
Following gene: 120599158
Centisome position: 57.56
GC content: 41.56
Gene sequence:
>2856_bases ATGAACTCTTTATCCTTAACAGCAAAAGCGGTTCGCTACGGTATATTTGCTGCGGCCAGCCTAACAACTTCAACATTCGT TTATTCAGAAGAACAAACGGAAATATTTGAGCGTATTGAAGTAACGGGTTCAAAAATTAAACGTATTGGAGAACTTGCAC CAACACCAGTGACAGTTATCTCTGGTGATGGATTAATTGATGCTGGTGTTGTGAACGTTGCAGATTTACTACACAAAATG CCTAATACATTAGTTGGATTATCACCAGAAACAACAAATAATACTGTATTTGCAAGCGGATTAAATAACACAGATTTAAG AGGTCTTGGCTCTGATCGTACACTCGTACTTGTAAACGGTCGTCGATTTGTTGCTGGAGCCCCTGGTTCTGGGGCTGTTG ATCTTAACAACATACCAACTGCCATGGTTGAGCGTATTGAAATCACAACTGGTGGTGCTTCTGCAGTATATGGCTCTGAT GCCATCGCAGGTGTTGTGAACATCATTACAAAGAAAAGCTTTGATGGCATTTCGGTTGATGTTTCAACAACACAACCAAC CGAGGATGGTGGTGAAGAAAAATATGCCTCAATAACATTTGGCTCTGAAATAGGTAAAGCTAACTTTGTGACTAACCTAA GTTGGGCTCGTCAGGAACAATTATCCTTTATGGATAGAAAATTTCTACGCGATGCACCTATCGTTGTACGTAATCCCAAT GCAACAGGTCCTGATGATCCTCAATCAATAGTGTGGGGACATGGTCAACAAGTATTAGCTTCCTACAGTAAGACTGGAAC ATTTGTTTCGAATGGTACCCGTTATTCATTTGATGAAAACGGCAATGTAAGACCGATGGAGTTAGGCCAACCTCTACCGC CATTAACGTCTGGTCGTGTCGATTATCTTGGTGGAGAAGGTTATAACTTCGCAGAAAACTCTTTTATCAAAACGCCATTA GATCGTATTAACTTTTTCTCTGTAATGAACTACGACATTAATGATGATCATAAAATGACAATGGAGGCGACGCTTAGTAA AACAGATGCCTATGGCGAAAGCTCTCCAGCTTTCCTAAGTTTTAAAGTGCATGATGATAATGGGTTTCTCTCCCCTGAAG CTGCAGCACTGATCGCTGCTGAAGAAGCTAGGCTTGTTAATGCAGGCAAAGCAGAACCAGGAGATGGTATTTCTCTAGGA TACCTTGCATCGGACTTTGGTAATCGAAAATATAGTCAAGAACGAACGACAGCCCGTATAGCACTAGGCTTTGAGGGAGC ACTTTCTGAAAATTGGTCTTATGACACCTATGCCACTGTTGGACATGTTCAAGCTGATACAGAATGGTACGGTGAAATGT TCGAGCAACGCTTCTATGACGCTGTTGATACAATAAAAAATGATAAAGGGGAAGTAGTCTGTCGTAGTGAAAGTGCTCGA AATAATGGATGCCTTCCACTCAATATATTTGGGCGCGGAATCTACGATAAAAACGCCTATGATTGGGTAAGTACTGACGC AATTCGACGCTCATCTATCACTCAATCAGCTCTCGGGGCATCCGTAAGTGGTGATCTATTTGAATTGCCAGCAGGTTTTG TATCGAGTGCATTCTCTCTCGAGTATAGAAAAGAGCAGGCAGACACTTTACCAGATCCAGCTATGCGAGAGGGCTTACTG TTCAACAACCAATCTCAGCCCCTTAAAGGTGAATTTGATGTAACGGAAGCTTCTGCAGAATTGTCAATTCCATTACTAAG TGACATTACATTAGTACAAGATTTAACACTGGAAACAGCTTTCCGTTATATGGATTACTCGACATCTGGTTCTGATACTG CTTGGAAAGTAGGCTTAAACTGGGCTGTCTTCGACGATTTGAGGATCAGATTAAACCGTTCGAAATCTGTTAGAGCTCCC AATATAGGTGACTTGTATAGCCCACCAGGACAAACATTCAGATCTATAAAGGATTATTGCGCTTCTAGCTACCGCAACCA AATAAATCCTGAATATCTAGACAATGTCTTGGCAAACTGTGCGGCACAAGGCATTCCTACCGATTTCGAACCATCTCAAG AGTGGTATGGTTCGACTCGTCCAGGATTTATAGTCGGCAATGAGGACTTAAAAAACGAAGTTGCTAATGATATCACTATC GGTTTTGTCTATACCCCTAACTTTATCGAGAACCTGAGTTTTACTGTTGATTACTGGAAATTTGATATGGAAAATGTCAT CAACAGTTTTACGGGCCCTGATGTTGTAAAGTACTGCTACCAATCCAGCACCCTAGACAATCCATTCTGTCCATTGCTTG AGCGAGATCCAGATACACATGAGCTCACCAATTACTATGAAAAGCCAGTTAACTCTGCGACCAGTATTACCTCTGGTGTC GATATTGAAGCTAACTATAAGTTTGAAAGTAGCTTTGGTGATTGGGGCTTCCGTCTATTCAGCACCTATCTAGAAGAACG TTCCTTTAATTCGACAGGTTTTGCAGAAGATGAAATTAAAGAAACTGGTGAGCAAGAGCGGCCACGTTGGCGTCATCGCT TTACAACGGATTACACCTACGGAGATTTCTCTGCAGTCCTAACTGCAAACTATCGCAGTAGCACCGTTTTAAGTAATGAC TGGTCACCCAATCAAAATAACTATAATGATATCCCATCATATATTACGTTTGATTTAACCAGTCGCTACAACATCACTGA TGCATTACAAGTTCGTGCTGGCATACTCAATATGTTTGACGAGACACCACCACGTCAGCCTGGTGTATATAACCAAGGTG CTTACTATGACATTCTCGGACAACGTATCACGATAGGGGTTAACTATACGTTTTAA
Upstream 100 bases:
>100_bases GACACACCTGTAATTAGTAAATATATATGGTACAGATTGTTAAATTCAATCTAAATTAAACCTATAAATTTAACCAATTA TAAATATCAAGGAGAGATAT
Downstream 100 bases:
>100_bases CTAGGTAAATTAAGGTCTCCCATTTAAAGTGACATATCATCAATTTCGATATGTCACTTTTTTTATTTAATAACACATTG AAAGTAATATTTAATCAACG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 951; Mature: 951
Protein sequence:
>951_residues MNSLSLTAKAVRYGIFAAASLTTSTFVYSEEQTEIFERIEVTGSKIKRIGELAPTPVTVISGDGLIDAGVVNVADLLHKM PNTLVGLSPETTNNTVFASGLNNTDLRGLGSDRTLVLVNGRRFVAGAPGSGAVDLNNIPTAMVERIEITTGGASAVYGSD AIAGVVNIITKKSFDGISVDVSTTQPTEDGGEEKYASITFGSEIGKANFVTNLSWARQEQLSFMDRKFLRDAPIVVRNPN ATGPDDPQSIVWGHGQQVLASYSKTGTFVSNGTRYSFDENGNVRPMELGQPLPPLTSGRVDYLGGEGYNFAENSFIKTPL DRINFFSVMNYDINDDHKMTMEATLSKTDAYGESSPAFLSFKVHDDNGFLSPEAAALIAAEEARLVNAGKAEPGDGISLG YLASDFGNRKYSQERTTARIALGFEGALSENWSYDTYATVGHVQADTEWYGEMFEQRFYDAVDTIKNDKGEVVCRSESAR NNGCLPLNIFGRGIYDKNAYDWVSTDAIRRSSITQSALGASVSGDLFELPAGFVSSAFSLEYRKEQADTLPDPAMREGLL FNNQSQPLKGEFDVTEASAELSIPLLSDITLVQDLTLETAFRYMDYSTSGSDTAWKVGLNWAVFDDLRIRLNRSKSVRAP NIGDLYSPPGQTFRSIKDYCASSYRNQINPEYLDNVLANCAAQGIPTDFEPSQEWYGSTRPGFIVGNEDLKNEVANDITI GFVYTPNFIENLSFTVDYWKFDMENVINSFTGPDVVKYCYQSSTLDNPFCPLLERDPDTHELTNYYEKPVNSATSITSGV DIEANYKFESSFGDWGFRLFSTYLEERSFNSTGFAEDEIKETGEQERPRWRHRFTTDYTYGDFSAVLTANYRSSTVLSND WSPNQNNYNDIPSYITFDLTSRYNITDALQVRAGILNMFDETPPRQPGVYNQGAYYDILGQRITIGVNYTF
Sequences:
>Translated_951_residues MNSLSLTAKAVRYGIFAAASLTTSTFVYSEEQTEIFERIEVTGSKIKRIGELAPTPVTVISGDGLIDAGVVNVADLLHKM PNTLVGLSPETTNNTVFASGLNNTDLRGLGSDRTLVLVNGRRFVAGAPGSGAVDLNNIPTAMVERIEITTGGASAVYGSD AIAGVVNIITKKSFDGISVDVSTTQPTEDGGEEKYASITFGSEIGKANFVTNLSWARQEQLSFMDRKFLRDAPIVVRNPN ATGPDDPQSIVWGHGQQVLASYSKTGTFVSNGTRYSFDENGNVRPMELGQPLPPLTSGRVDYLGGEGYNFAENSFIKTPL DRINFFSVMNYDINDDHKMTMEATLSKTDAYGESSPAFLSFKVHDDNGFLSPEAAALIAAEEARLVNAGKAEPGDGISLG YLASDFGNRKYSQERTTARIALGFEGALSENWSYDTYATVGHVQADTEWYGEMFEQRFYDAVDTIKNDKGEVVCRSESAR NNGCLPLNIFGRGIYDKNAYDWVSTDAIRRSSITQSALGASVSGDLFELPAGFVSSAFSLEYRKEQADTLPDPAMREGLL FNNQSQPLKGEFDVTEASAELSIPLLSDITLVQDLTLETAFRYMDYSTSGSDTAWKVGLNWAVFDDLRIRLNRSKSVRAP NIGDLYSPPGQTFRSIKDYCASSYRNQINPEYLDNVLANCAAQGIPTDFEPSQEWYGSTRPGFIVGNEDLKNEVANDITI GFVYTPNFIENLSFTVDYWKFDMENVINSFTGPDVVKYCYQSSTLDNPFCPLLERDPDTHELTNYYEKPVNSATSITSGV DIEANYKFESSFGDWGFRLFSTYLEERSFNSTGFAEDEIKETGEQERPRWRHRFTTDYTYGDFSAVLTANYRSSTVLSND WSPNQNNYNDIPSYITFDLTSRYNITDALQVRAGILNMFDETPPRQPGVYNQGAYYDILGQRITIGVNYTF >Mature_951_residues MNSLSLTAKAVRYGIFAAASLTTSTFVYSEEQTEIFERIEVTGSKIKRIGELAPTPVTVISGDGLIDAGVVNVADLLHKM PNTLVGLSPETTNNTVFASGLNNTDLRGLGSDRTLVLVNGRRFVAGAPGSGAVDLNNIPTAMVERIEITTGGASAVYGSD AIAGVVNIITKKSFDGISVDVSTTQPTEDGGEEKYASITFGSEIGKANFVTNLSWARQEQLSFMDRKFLRDAPIVVRNPN ATGPDDPQSIVWGHGQQVLASYSKTGTFVSNGTRYSFDENGNVRPMELGQPLPPLTSGRVDYLGGEGYNFAENSFIKTPL DRINFFSVMNYDINDDHKMTMEATLSKTDAYGESSPAFLSFKVHDDNGFLSPEAAALIAAEEARLVNAGKAEPGDGISLG YLASDFGNRKYSQERTTARIALGFEGALSENWSYDTYATVGHVQADTEWYGEMFEQRFYDAVDTIKNDKGEVVCRSESAR NNGCLPLNIFGRGIYDKNAYDWVSTDAIRRSSITQSALGASVSGDLFELPAGFVSSAFSLEYRKEQADTLPDPAMREGLL FNNQSQPLKGEFDVTEASAELSIPLLSDITLVQDLTLETAFRYMDYSTSGSDTAWKVGLNWAVFDDLRIRLNRSKSVRAP NIGDLYSPPGQTFRSIKDYCASSYRNQINPEYLDNVLANCAAQGIPTDFEPSQEWYGSTRPGFIVGNEDLKNEVANDITI GFVYTPNFIENLSFTVDYWKFDMENVINSFTGPDVVKYCYQSSTLDNPFCPLLERDPDTHELTNYYEKPVNSATSITSGV DIEANYKFESSFGDWGFRLFSTYLEERSFNSTGFAEDEIKETGEQERPRWRHRFTTDYTYGDFSAVLTANYRSSTVLSND WSPNQNNYNDIPSYITFDLTSRYNITDALQVRAGILNMFDETPPRQPGVYNQGAYYDILGQRITIGVNYTF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=161, Percent_Identity=36.0248447204969, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1790405, Length=167, Percent_Identity=33.5329341317365, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 105120; Mature: 105120
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLSLTAKAVRYGIFAAASLTTSTFVYSEEQTEIFERIEVTGSKIKRIGELAPTPVTVI CCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHCHHHHHHHHCCCCCCEEEE SGDGLIDAGVVNVADLLHKMPNTLVGLSPETTNNTVFASGLNNTDLRGLGSDRTLVLVNG ECCCCCCCHHHHHHHHHHHCCHHEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECC RRFVAGAPGSGAVDLNNIPTAMVERIEITTGGASAVYGSDAIAGVVNIITKKSFDGISVD CEEEEECCCCCCEECCCCCHHHHEEEEEECCCCCEECCCHHHHHHHHHHHHCCCCCEEEE VSTTQPTEDGGEEKYASITFGSEIGKANFVTNLSWARQEQLSFMDRKFLRDAPIVVRNPN EECCCCCCCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEECCC ATGPDDPQSIVWGHGQQVLASYSKTGTFVSNGTRYSFDENGNVRPMELGQPLPPLTSGRV CCCCCCCCCEEECCCHHHHHHHHHCCCEEECCEEEEECCCCCCCCHHCCCCCCCCCCCCE DYLGGEGYNFAENSFIKTPLDRINFFSVMNYDINDDHKMTMEATLSKTDAYGESSPAFLS EECCCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCCCCCEEE FKVHDDNGFLSPEAAALIAAEEARLVNAGKAEPGDGISLGYLASDFGNRKYSQERTTARI EEEECCCCCCCCCHHEEEEHHHHHEEECCCCCCCCCEEEHHHHHHHCCCCCCCCCCEEEE ALGFEGALSENWSYDTYATVGHVQADTEWYGEMFEQRFYDAVDTIKNDKGEVVCRSESAR EEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC NNGCLPLNIFGRGIYDKNAYDWVSTDAIRRSSITQSALGASVSGDLFELPAGFVSSAFSL CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH EYRKEQADTLPDPAMREGLLFNNQSQPLKGEFDVTEASAELSIPLLSDITLVQDLTLETA HHHHHHHCCCCCHHHHCCEEECCCCCCCCCCCCEECCCCEECCCHHHCHHHHHHHHHHHH FRYMDYSTSGSDTAWKVGLNWAVFDDLRIRLNRSKSVRAPNIGDLYSPPGQTFRSIKDYC HHHHCCCCCCCCCEEEEECCEEEEECEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH ASSYRNQINPEYLDNVLANCAAQGIPTDFEPSQEWYGSTRPGFIVGNEDLKNEVANDITI HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEECCHHHHHHHHCCEEE GFVYTPNFIENLSFTVDYWKFDMENVINSFTGPDVVKYCYQSSTLDNPFCPLLERDPDTH EEEECCHHHHCCCEEEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCCCHH ELTNYYEKPVNSATSITSGVDIEANYKFESSFGDWGFRLFSTYLEERSFNSTGFAEDEIK HHHHHHHHCCCCHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH ETGEQERPRWRHRFTTDYTYGDFSAVLTANYRSSTVLSNDWSPNQNNYNDIPSYITFDLT HCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEC SRYNITDALQVRAGILNMFDETPPRQPGVYNQGAYYDILGQRITIGVNYTF CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEEECC >Mature Secondary Structure MNSLSLTAKAVRYGIFAAASLTTSTFVYSEEQTEIFERIEVTGSKIKRIGELAPTPVTVI CCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHCHHHHHHHHCCCCCCEEEE SGDGLIDAGVVNVADLLHKMPNTLVGLSPETTNNTVFASGLNNTDLRGLGSDRTLVLVNG ECCCCCCCHHHHHHHHHHHCCHHEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECC RRFVAGAPGSGAVDLNNIPTAMVERIEITTGGASAVYGSDAIAGVVNIITKKSFDGISVD CEEEEECCCCCCEECCCCCHHHHEEEEEECCCCCEECCCHHHHHHHHHHHHCCCCCEEEE VSTTQPTEDGGEEKYASITFGSEIGKANFVTNLSWARQEQLSFMDRKFLRDAPIVVRNPN EECCCCCCCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEECCC ATGPDDPQSIVWGHGQQVLASYSKTGTFVSNGTRYSFDENGNVRPMELGQPLPPLTSGRV CCCCCCCCCEEECCCHHHHHHHHHCCCEEECCEEEEECCCCCCCCHHCCCCCCCCCCCCE DYLGGEGYNFAENSFIKTPLDRINFFSVMNYDINDDHKMTMEATLSKTDAYGESSPAFLS EECCCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCCCCCEEE FKVHDDNGFLSPEAAALIAAEEARLVNAGKAEPGDGISLGYLASDFGNRKYSQERTTARI EEEECCCCCCCCCHHEEEEHHHHHEEECCCCCCCCCEEEHHHHHHHCCCCCCCCCCEEEE ALGFEGALSENWSYDTYATVGHVQADTEWYGEMFEQRFYDAVDTIKNDKGEVVCRSESAR EEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC NNGCLPLNIFGRGIYDKNAYDWVSTDAIRRSSITQSALGASVSGDLFELPAGFVSSAFSL CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH EYRKEQADTLPDPAMREGLLFNNQSQPLKGEFDVTEASAELSIPLLSDITLVQDLTLETA HHHHHHHCCCCCHHHHCCEEECCCCCCCCCCCCEECCCCEECCCHHHCHHHHHHHHHHHH FRYMDYSTSGSDTAWKVGLNWAVFDDLRIRLNRSKSVRAPNIGDLYSPPGQTFRSIKDYC HHHHCCCCCCCCCEEEEECCEEEEECEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH ASSYRNQINPEYLDNVLANCAAQGIPTDFEPSQEWYGSTRPGFIVGNEDLKNEVANDITI HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEECCHHHHHHHHCCEEE GFVYTPNFIENLSFTVDYWKFDMENVINSFTGPDVVKYCYQSSTLDNPFCPLLERDPDTH EEEECCHHHHCCCEEEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCCCHH ELTNYYEKPVNSATSITSGVDIEANYKFESSFGDWGFRLFSTYLEERSFNSTGFAEDEIK HHHHHHHHCCCCHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH ETGEQERPRWRHRFTTDYTYGDFSAVLTANYRSSTVLSNDWSPNQNNYNDIPSYITFDLT HCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEC SRYNITDALQVRAGILNMFDETPPRQPGVYNQGAYYDILGQRITIGVNYTF CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]