| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599149
Identifier: 120599149
GI number: 120599149
Start: 2701791
End: 2704430
Strand: Direct
Name: 120599149
Synonym: Sputw3181_2345
Alternate gene names: NA
Gene position: 2701791-2704430 (Clockwise)
Preceding gene: 120599148
Following gene: 120599152
Centisome position: 57.38
GC content: 39.73
Gene sequence:
>2640_bases ATGAAAAGTGGTATTCGGAACTCTGTGATGATGGAAAAAAAGTCAATATCTGAGCCACAGACCCCATTGACCCAATGGCA AAATAGCTTGCCGTTTAAATTTAGTCTTGTCCAACTTATCATCGCGAGTATTTTGATTTTTAGCACAGCTTGGGTCATGT TACGCATTCAAAATCAGCAAATAACAGAACAGCAGGCAGTACTAAATCAGAATCATGGACAGATTGTTATTGCAAAATTG CAGGAAATGACCTCTCAAGTCGAAAATCTTGTCAATGCAATTGCCAGTATCGCTAAGTTATATCGCTATGACCATGAGCA ACTCAGTAAGACTATCCCCACTTTGCTTGCGCTTGAAAATCAAAAGGATGTGATATCCGGCGGCGGTATTTGGCCCGAAC CGAGTGCCTTTAATCAACAAAAGTTTCGCAATAGTCTCTTTTGGTCGCGTAATATTCACGATGAGCTCATTAAGATAGAT ACCTATAATGATGACGCGTTCCCAAGTTACCACACAGAAGCATGGTATCGCCCCACACGTTATTTCCCCTCAGGAAAAAC CTTTTGGTCTAAATCTTATATCGACCCAAGCACACAGGAACCAATGATTACAGCCTCGGCTGCTGTCTGGATGGACCATC AATTTATAGGCGCAGCAACGGCCGATATCAGTTTAGAAAAACTCAATACGCTACTGCGTAATGCAATGACGGATATCAGT GGTTATGTGATAGTGCTTGATTATCACAATCAGGTATTAGCTTATCCGCGTGGGAAAAATCATACCGCGATCTTGGACCA AGCAGCAAACTCGTTGCTGACATTTAATGATCTGACAAAACAGCACCCAAACTTTGATCCACTTGCATTAGCCCTAAATA CGGCTGACAGTGCCTTTGTGACTAAAGCTATTGCTGAACGTGTGTTTACCCAAGAACAAATGGATAATCTCACCCGTTTA ACAGCAGACAATGAACGCAAAATGCTCACCGCAATTGTTAATAATAATGCTCGCAATCATTTCACAACCCCTCAACAGCT TGCATCGGTTCCCTTAGCGACAGATCCAATACTCAACACCCCAGCATTAGCATCTATCTTTTTAATGCCCAATACCTACT GGAAGATATTGGTCGTGACACCCATTGCTCCGCTGCAGGATACAGCCAAACATTTAGTTGAAAAAATAGGAATATATTTA GTTTTAATTCAACTCATTGGGTTAATTATCTTGTTCATATTGCAACATAGGTTAATCATTACCCCAATCATGAAAATGGT TGAAGCATTAAAACGTGACGATCCTACTGCCATCGAATTTAAGGCTAAACAACGTCACGATGAAATAGGCTTACTGGCAA AAACATTACTCTCACGCACTCAACAACTCGATGTCGCCATGGCAAGCCTTGATGCAAGCAATCTCGCCCTAGAACAGCAA TTGAAAACTCAGCAACTATTTCAACAAGAATTAAATCACCATAAAGAACAATTAAGATCCCTACTTAAATTTTCTAAACA CCTCATTTATATTAAAGATTTAAGTGGTAAATACACGTTAGTTAACGATAAATATTGCGAAGTACTTGGGATTGAACGCA GACGAATTATCGGTGTATCTGACTTTGAATTGTTTCAAAGTCAATTAGCACAGACATTTCAAAAAAATGATCAGCGAGTC ACCCAAAACCAAGATGCCATCCATTTTGAAGAATCAATTCCGACGCCTCACGGATATCAAGTCTATCAAATGACAAAATT TGATATCAGGGATGATGAAGATAATTCTATTGCCGTTGGTGCTATCGGTTTCAATATGGATCTCAAAAAACGCCAAGAAC AAGAGCAAGAAAAACGATTCCAGAACCAAGCTGCTCACCTACAAAAGCAACAGAGTAAAATGCAGATAGTCAACGATGAG AATAATGCTCTGAAACAACAGCTTGCAGAGTTTAACAAAGCGTTCGAGATGCAATTCCAAATCAACCTAAGCAAAGCACA AAGCCAAAAGCTAATGCAAAATTTCCTTGCTGAAGTCATCACGCAAATAATGCAAGAACAAGATCGCTTACTTGCACAAA TCTGTCAGACACAAGCCAATGGGGGTGATGAATCTCAAATTGCCATTACTGACATGATGACAGTCCAAGCAAAAAGGCTT AGGCACATAGCACAACTTTTTAACGCGCATCAAAATGATGTCAGGCCATTACATTTAGCGCTGTTTATGCGCCAATTACT GGATTTATTACAAGTACAGTTCATTCGCGCTAATGTCACTGTATGCTTAACATGTGATGAAAACCTGATTATCGATGGCA ACTCATGGCAATATCTGCAACTCTTCTATCGGCTACTCAACAACACACTCAATCATGCCTTTAAAAACCATCATCAAATA CGGGAAATCACCATTCATCTTCAAAGAAATGCTAATGAACTCCAAGTGGAACTCACTGATAATGGAATTGGTATGACAGA CCAACAACTTTCACAGTTACAGCAAAATATGGCACAAAATCTCTGCCTAGGGACACTCACTTGCTTAAATTTATGGATGA AAAATGACCTAAAAGGACAACTCACCATACAAAGTGAGCTTAATAAAGGGACTAAAATTCTCTGCCGTTGGCCATGTTAG
Upstream 100 bases:
>100_bases ATAAAATTTTCTTCTTAAATCAACCATTATTACCTTCTTTATCCCACTGATTTTGATATAGACCAATAGCAAAAGACTAA AAAGACGCTAAACTGGCTCA
Downstream 100 bases:
>100_bases GACTAAACCTATATTCAAGCCGCATATGCGGCTTGATCGAATGGAATGAATGGTAGACGTGACCTATATATATAAAAAAA TGGTCAAATCTACATTGCCC
Product: putative PAS/PAC sensor protein
Products: NA
Alternate protein names: PAS/PAC Sensor Protein; Sensor Histidine Kinase; Sensory Box Histidine Kinase; Methyl-Accepting Chemotaxis Receptor Protein; Signal Transduction Histidine Kinase; Methyl-Accepting Chemotaxis Sensory Transducer; Multi-Sensor Signal Transduction Histidine Kinase; Methyl-Accepting Chemotaxis Transducer; GGDEF Domain-Containing Protein; Histidine Kinase; Fog Ggdef Domain Containing Protein; Two-Component Hybrid Histidine Kinase; Methyl-Accepting Chemotaxis Protein I; Sensory Histidine Kinase; Sensory Box Protein; Chemotaxis Sensory Transducer; Signal Transduction Histidine Kinase Sensor; PAS Domain-Containing Protein; ATPase Histidine Kinase- DNA Gyrase B- And
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MKSGIRNSVMMEKKSISEPQTPLTQWQNSLPFKFSLVQLIIASILIFSTAWVMLRIQNQQITEQQAVLNQNHGQIVIAKL QEMTSQVENLVNAIASIAKLYRYDHEQLSKTIPTLLALENQKDVISGGGIWPEPSAFNQQKFRNSLFWSRNIHDELIKID TYNDDAFPSYHTEAWYRPTRYFPSGKTFWSKSYIDPSTQEPMITASAAVWMDHQFIGAATADISLEKLNTLLRNAMTDIS GYVIVLDYHNQVLAYPRGKNHTAILDQAANSLLTFNDLTKQHPNFDPLALALNTADSAFVTKAIAERVFTQEQMDNLTRL TADNERKMLTAIVNNNARNHFTTPQQLASVPLATDPILNTPALASIFLMPNTYWKILVVTPIAPLQDTAKHLVEKIGIYL VLIQLIGLIILFILQHRLIITPIMKMVEALKRDDPTAIEFKAKQRHDEIGLLAKTLLSRTQQLDVAMASLDASNLALEQQ LKTQQLFQQELNHHKEQLRSLLKFSKHLIYIKDLSGKYTLVNDKYCEVLGIERRRIIGVSDFELFQSQLAQTFQKNDQRV TQNQDAIHFEESIPTPHGYQVYQMTKFDIRDDEDNSIAVGAIGFNMDLKKRQEQEQEKRFQNQAAHLQKQQSKMQIVNDE NNALKQQLAEFNKAFEMQFQINLSKAQSQKLMQNFLAEVITQIMQEQDRLLAQICQTQANGGDESQIAITDMMTVQAKRL RHIAQLFNAHQNDVRPLHLALFMRQLLDLLQVQFIRANVTVCLTCDENLIIDGNSWQYLQLFYRLLNNTLNHAFKNHHQI REITIHLQRNANELQVELTDNGIGMTDQQLSQLQQNMAQNLCLGTLTCLNLWMKNDLKGQLTIQSELNKGTKILCRWPC
Sequences:
>Translated_879_residues MKSGIRNSVMMEKKSISEPQTPLTQWQNSLPFKFSLVQLIIASILIFSTAWVMLRIQNQQITEQQAVLNQNHGQIVIAKL QEMTSQVENLVNAIASIAKLYRYDHEQLSKTIPTLLALENQKDVISGGGIWPEPSAFNQQKFRNSLFWSRNIHDELIKID TYNDDAFPSYHTEAWYRPTRYFPSGKTFWSKSYIDPSTQEPMITASAAVWMDHQFIGAATADISLEKLNTLLRNAMTDIS GYVIVLDYHNQVLAYPRGKNHTAILDQAANSLLTFNDLTKQHPNFDPLALALNTADSAFVTKAIAERVFTQEQMDNLTRL TADNERKMLTAIVNNNARNHFTTPQQLASVPLATDPILNTPALASIFLMPNTYWKILVVTPIAPLQDTAKHLVEKIGIYL VLIQLIGLIILFILQHRLIITPIMKMVEALKRDDPTAIEFKAKQRHDEIGLLAKTLLSRTQQLDVAMASLDASNLALEQQ LKTQQLFQQELNHHKEQLRSLLKFSKHLIYIKDLSGKYTLVNDKYCEVLGIERRRIIGVSDFELFQSQLAQTFQKNDQRV TQNQDAIHFEESIPTPHGYQVYQMTKFDIRDDEDNSIAVGAIGFNMDLKKRQEQEQEKRFQNQAAHLQKQQSKMQIVNDE NNALKQQLAEFNKAFEMQFQINLSKAQSQKLMQNFLAEVITQIMQEQDRLLAQICQTQANGGDESQIAITDMMTVQAKRL RHIAQLFNAHQNDVRPLHLALFMRQLLDLLQVQFIRANVTVCLTCDENLIIDGNSWQYLQLFYRLLNNTLNHAFKNHHQI REITIHLQRNANELQVELTDNGIGMTDQQLSQLQQNMAQNLCLGTLTCLNLWMKNDLKGQLTIQSELNKGTKILCRWPC >Mature_879_residues MKSGIRNSVMMEKKSISEPQTPLTQWQNSLPFKFSLVQLIIASILIFSTAWVMLRIQNQQITEQQAVLNQNHGQIVIAKL QEMTSQVENLVNAIASIAKLYRYDHEQLSKTIPTLLALENQKDVISGGGIWPEPSAFNQQKFRNSLFWSRNIHDELIKID TYNDDAFPSYHTEAWYRPTRYFPSGKTFWSKSYIDPSTQEPMITASAAVWMDHQFIGAATADISLEKLNTLLRNAMTDIS GYVIVLDYHNQVLAYPRGKNHTAILDQAANSLLTFNDLTKQHPNFDPLALALNTADSAFVTKAIAERVFTQEQMDNLTRL TADNERKMLTAIVNNNARNHFTTPQQLASVPLATDPILNTPALASIFLMPNTYWKILVVTPIAPLQDTAKHLVEKIGIYL VLIQLIGLIILFILQHRLIITPIMKMVEALKRDDPTAIEFKAKQRHDEIGLLAKTLLSRTQQLDVAMASLDASNLALEQQ LKTQQLFQQELNHHKEQLRSLLKFSKHLIYIKDLSGKYTLVNDKYCEVLGIERRRIIGVSDFELFQSQLAQTFQKNDQRV TQNQDAIHFEESIPTPHGYQVYQMTKFDIRDDEDNSIAVGAIGFNMDLKKRQEQEQEKRFQNQAAHLQKQQSKMQIVNDE NNALKQQLAEFNKAFEMQFQINLSKAQSQKLMQNFLAEVITQIMQEQDRLLAQICQTQANGGDESQIAITDMMTVQAKRL RHIAQLFNAHQNDVRPLHLALFMRQLLDLLQVQFIRANVTVCLTCDENLIIDGNSWQYLQLFYRLLNNTLNHAFKNHHQI REITIHLQRNANELQVELTDNGIGMTDQQLSQLQQNMAQNLCLGTLTCLNLWMKNDLKGQLTIQSELNKGTKILCRWPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100817; Mature: 100817
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: PS50112 PAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSGIRNSVMMEKKSISEPQTPLTQWQNSLPFKFSLVQLIIASILIFSTAWVMLRIQNQQ CCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCHH ITEQQAVLNQNHGQIVIAKLQEMTSQVENLVNAIASIAKLYRYDHEQLSKTIPTLLALEN HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECC QKDVISGGGIWPEPSAFNQQKFRNSLFWSRNIHDELIKIDTYNDDAFPSYHTEAWYRPTR CCCEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCC YFPSGKTFWSKSYIDPSTQEPMITASAAVWMDHQFIGAATADISLEKLNTLLRNAMTDIS CCCCCCCEECCCCCCCCCCCCEEEEHHHHHCCCHHHCCHHCCCCHHHHHHHHHHHHHHCC GYVIVLDYHNQVLAYPRGKNHTAILDQAANSLLTFNDLTKQHPNFDPLALALNTADSAFV CEEEEEECCCCEEECCCCCCCHHHHHHHHHHHEEHHHHHHCCCCCCCEEEEECCCCHHHH TKAIAERVFTQEQMDNLTRLTADNERKMLTAIVNNNARNHFTTPQQLASVPLATDPILNT HHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCC PALASIFLMPNTYWKILVVTPIAPLQDTAKHLVEKIGIYLVLIQLIGLIILFILQHRLII CHHHEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIMKMVEALKRDDPTAIEFKAKQRHDEIGLLAKTLLSRTQQLDVAMASLDASNLALEQQ HHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LKTQQLFQQELNHHKEQLRSLLKFSKHLIYIKDLSGKYTLVNDKYCEVLGIERRRIIGVS HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCHHHHHCCCCCEEECCC DFELFQSQLAQTFQKNDQRVTQNQDAIHFEESIPTPHGYQVYQMTKFDIRDDEDNSIAVG HHHHHHHHHHHHHHCCCHHHHCCCCCEEEHHCCCCCCCEEEEEEEEECCCCCCCCCEEEE AIGFNMDLKKRQEQEQEKRFQNQAAHLQKQQSKMQIVNDENNALKQQLAEFNKAFEMQFQ EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHEEEEEE INLSKAQSQKLMQNFLAEVITQIMQEQDRLLAQICQTQANGGDESQIAITDMMTVQAKRL EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHH RHIAQLFNAHQNDVRPLHLALFMRQLLDLLQVQFIRANVTVCLTCDENLIIDGNSWQYLQ HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECEEEEEEECCCEEEECCCHHHHH LFYRLLNNTLNHAFKNHHQIREITIHLQRNANELQVELTDNGIGMTDQQLSQLQQNMAQN HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH LCLGTLTCLNLWMKNDLKGQLTIQSELNKGTKILCRWPC HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEEECCC >Mature Secondary Structure MKSGIRNSVMMEKKSISEPQTPLTQWQNSLPFKFSLVQLIIASILIFSTAWVMLRIQNQQ CCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCHH ITEQQAVLNQNHGQIVIAKLQEMTSQVENLVNAIASIAKLYRYDHEQLSKTIPTLLALEN HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECC QKDVISGGGIWPEPSAFNQQKFRNSLFWSRNIHDELIKIDTYNDDAFPSYHTEAWYRPTR CCCEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCC YFPSGKTFWSKSYIDPSTQEPMITASAAVWMDHQFIGAATADISLEKLNTLLRNAMTDIS CCCCCCCEECCCCCCCCCCCCEEEEHHHHHCCCHHHCCHHCCCCHHHHHHHHHHHHHHCC GYVIVLDYHNQVLAYPRGKNHTAILDQAANSLLTFNDLTKQHPNFDPLALALNTADSAFV CEEEEEECCCCEEECCCCCCCHHHHHHHHHHHEEHHHHHHCCCCCCCEEEEECCCCHHHH TKAIAERVFTQEQMDNLTRLTADNERKMLTAIVNNNARNHFTTPQQLASVPLATDPILNT HHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCC PALASIFLMPNTYWKILVVTPIAPLQDTAKHLVEKIGIYLVLIQLIGLIILFILQHRLII CHHHEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPIMKMVEALKRDDPTAIEFKAKQRHDEIGLLAKTLLSRTQQLDVAMASLDASNLALEQQ HHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LKTQQLFQQELNHHKEQLRSLLKFSKHLIYIKDLSGKYTLVNDKYCEVLGIERRRIIGVS HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCHHHHHCCCCCEEECCC DFELFQSQLAQTFQKNDQRVTQNQDAIHFEESIPTPHGYQVYQMTKFDIRDDEDNSIAVG HHHHHHHHHHHHHHCCCHHHHCCCCCEEEHHCCCCCCCEEEEEEEEECCCCCCCCCEEEE AIGFNMDLKKRQEQEQEKRFQNQAAHLQKQQSKMQIVNDENNALKQQLAEFNKAFEMQFQ EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHEEEEEE INLSKAQSQKLMQNFLAEVITQIMQEQDRLLAQICQTQANGGDESQIAITDMMTVQAKRL EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHH RHIAQLFNAHQNDVRPLHLALFMRQLLDLLQVQFIRANVTVCLTCDENLIIDGNSWQYLQ HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECEEEEEEECCCEEEECCCHHHHH LFYRLLNNTLNHAFKNHHQIREITIHLQRNANELQVELTDNGIGMTDQQLSQLQQNMAQN HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH LCLGTLTCLNLWMKNDLKGQLTIQSELNKGTKILCRWPC HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA