Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 120599142

GI number: 120599142

Start: 2692695

End: 2693279

Strand: Direct

Name: sodB [H]

Synonym: Sputw3181_2338

Alternate gene names: 120599142

Gene position: 2692695-2693279 (Clockwise)

Preceding gene: 120599140

Following gene: 120599143

Centisome position: 57.19

GC content: 44.79

Gene sequence:

>585_bases
ATGGCTTTCGAATTACCCGCATTACCATATGCAAAGAACGCACTAGAACCACACATTTCTCAAGAAACCATTGAATACCA
CTACGGCAAGCATCACAACACTTATGTTGTTAAGCTAAACGGCTTAATCGAAGGAACTGATTTCGCAGACAAATCTTTAG
AAGAAATCATCAAAACCTCTACTGGTGGTGTGTTTAACAACGCAGCTCAAGTGTGGAACCACACTTTCTACTGGAACTGC
CTAGCGCCAAATGCTGGCGGCGAGCCAACTGGCCCAGTTGCTGATGCCATCAATGCAGCCTTCGGTTCATTTGAAGCATT
TAAAGCACAATTTACTGATTCAGCAGTGAATAACTTCGGTAGCGCTTGGACTTGGTTAGTAAAAAAAGCCGATGGTACTC
TTGCTATCGTTAACACTAGCAACGCTGCAACACCACTGACTGACAGCACTGTGACACCAATCCTGACTGTAGATGTGTGG
GAACACGCTTACTACATCGATTACCGCAACGTACGTCCAGACTATTTAGCCCACTTCTGGCAATTAGTAAACTGGGACTT
CGTGAACCAAAACTACGCGGGTTAA

Upstream 100 bases:

>100_bases
AATTAGCGAAACAATGATTCACATCACAAATTTTATCGGTACAATAGTGCCTAGTGAGCACGTTTAAGAAACGATAACCT
AAGACCATGGAGAGATACTA

Downstream 100 bases:

>100_bases
TCACCTCTTAGCAATACTTTAAAAGAGCCCAAGTGGCTCTTTTTTATTGCCTCAAAAATCATTCACCTTAAACTTCCCAT
TAAACCTCACCTGATAACTA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAFELPALPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIEGTDFADKSLEEIIKTSTGGVFNNAAQVWNHTFYWNC
LAPNAGGEPTGPVADAINAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKKADGTLAIVNTSNAATPLTDSTVTPILTVDVW
EHAYYIDYRNVRPDYLAHFWQLVNWDFVNQNYAG

Sequences:

>Translated_194_residues
MAFELPALPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIEGTDFADKSLEEIIKTSTGGVFNNAAQVWNHTFYWNC
LAPNAGGEPTGPVADAINAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKKADGTLAIVNTSNAATPLTDSTVTPILTVDVW
EHAYYIDYRNVRPDYLAHFWQLVNWDFVNQNYAG
>Mature_193_residues
AFELPALPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIEGTDFADKSLEEIIKTSTGGVFNNAAQVWNHTFYWNCL
APNAGGEPTGPVADAINAAFGSFEAFKAQFTDSAVNNFGSAWTWLVKKADGTLAIVNTSNAATPLTDSTVTPILTVDVWE
HAYYIDYRNVRPDYLAHFWQLVNWDFVNQNYAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=41.9191919191919, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=41.9191919191919, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI67782309, Length=190, Percent_Identity=36.8421052631579, Blast_Score=114, Evalue=7e-26,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=77.720207253886, Blast_Score=314, Evalue=2e-87,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=41.2621359223301, Blast_Score=159, Evalue=8e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=39.0625, Blast_Score=134, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=38.0208333333333, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=34.1346153846154, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136812, Length=192, Percent_Identity=38.5416666666667, Blast_Score=131, Evalue=3e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21583; Mature: 21452

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIEGTDFADKSLEEIIKTS
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEECCCCHHHHHHHHHHHC
TGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGPVADAINAAFGSFEAFKAQFTDSAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SAWTWLVKKADGTLAIVNTSNAATPLTDSTVTPILTVDVWEHAYYIDYRNVRPDYLAHFW
CCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHH
QLVNWDFVNQNYAG
HHHHHEECCCCCCC
>Mature Secondary Structure 
AFELPALPYAKNALEPHISQETIEYHYGKHHNTYVVKLNGLIEGTDFADKSLEEIIKTS
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEECCCCHHHHHHHHHHHC
TGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGPVADAINAAFGSFEAFKAQFTDSAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SAWTWLVKKADGTLAIVNTSNAATPLTDSTVTPILTVDVWEHAYYIDYRNVRPDYLAHFW
CCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHH
QLVNWDFVNQNYAG
HHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]