| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120599136
Identifier: 120599136
GI number: 120599136
Start: 2686017
End: 2686439
Strand: Direct
Name: 120599136
Synonym: Sputw3181_2332
Alternate gene names: NA
Gene position: 2686017-2686439 (Clockwise)
Preceding gene: 120599135
Following gene: 120599137
Centisome position: 57.05
GC content: 40.43
Gene sequence:
>423_bases ATGCCCCTGATCCGATCGCGATTTTCAATCTTAGGTAATGCCATGACATCAAATACCCTTCTTATTCTTAGCCGCTTTGG CTATCTTGCACTGGTGCTGCTCCTTGGCGGTTGGTTTATCGGTCAAAGCGTTAATGGCGAATATACTTTATTATTCAGCT TATTATGGCTAATACCTTTGTTATTACCTATCAGAGGTGTCATAAAAGGCAATCCCTATACCTATGCTTGGGCAAGTTTT ATTTTATGCCTATATATGCTGCATGGACTGACCCTACTGTATGTCACCACTGATGCCTTCGCATTTGCATTAATTGAAGT CTTGTTAATTGGTGTATTACTGATCACCTTTCCTTTCTATGCACGGCTTCGTGGCCGAGAATTGGGTTTAGGTTTGAAGA AAAAATCTGCTAAAAACCAATAG
Upstream 100 bases:
>100_bases GGTCAACAACCCTAAACTCCTTGAGCGTCCAATAGTGCTTGCAAATGGCTACGCGGTAATAGGTCGTCCACCAGAAAATG TGCTTACTATTCTGTAATAG
Downstream 100 bases:
>100_bases CTCCAGCCCACGTGACCTAATTCAACTTACAATGTTAATTATTAAGGCGCGGCATAATCTGGGTCGCGCCCTTATCCCCA ACCTCACCTTTTTTAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MPLIRSRFSILGNAMTSNTLLILSRFGYLALVLLLGGWFIGQSVNGEYTLLFSLLWLIPLLLPIRGVIKGNPYTYAWASF ILCLYMLHGLTLLYVTTDAFAFALIEVLLIGVLLITFPFYARLRGRELGLGLKKKSAKNQ
Sequences:
>Translated_140_residues MPLIRSRFSILGNAMTSNTLLILSRFGYLALVLLLGGWFIGQSVNGEYTLLFSLLWLIPLLLPIRGVIKGNPYTYAWASF ILCLYMLHGLTLLYVTTDAFAFALIEVLLIGVLLITFPFYARLRGRELGLGLKKKSAKNQ >Mature_139_residues PLIRSRFSILGNAMTSNTLLILSRFGYLALVLLLGGWFIGQSVNGEYTLLFSLLWLIPLLLPIRGVIKGNPYTYAWASFI LCLYMLHGLTLLYVTTDAFAFALIEVLLIGVLLITFPFYARLRGRELGLGLKKKSAKNQ
Specific function: Unknown
COG id: COG3308
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15687; Mature: 15556
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLIRSRFSILGNAMTSNTLLILSRFGYLALVLLLGGWFIGQSVNGEYTLLFSLLWLIPL CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LLPIRGVIKGNPYTYAWASFILCLYMLHGLTLLYVTTDAFAFALIEVLLIGVLLITFPFY HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLRGRELGLGLKKKSAKNQ HHHCCHHHCCCCCCCCCCCC >Mature Secondary Structure PLIRSRFSILGNAMTSNTLLILSRFGYLALVLLLGGWFIGQSVNGEYTLLFSLLWLIPL CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LLPIRGVIKGNPYTYAWASFILCLYMLHGLTLLYVTTDAFAFALIEVLLIGVLLITFPFY HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLRGRELGLGLKKKSAKNQ HHHCCHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA