| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yfgD [H]
Identifier: 120599135
GI number: 120599135
Start: 2685663
End: 2686013
Strand: Direct
Name: yfgD [H]
Synonym: Sputw3181_2331
Alternate gene names: 120599135
Gene position: 2685663-2686013 (Clockwise)
Preceding gene: 120599134
Following gene: 120599136
Centisome position: 57.04
GC content: 43.3
Gene sequence:
>351_bases ATGACCCAAGCGACGATTTACCATAATCCCCGTTGTTCTAAAAGCCGTGAGACCCTCGCGCTACTTGAGCAACAAGGCTG TGATATTCATGTGATTGAATATTTAAAAAATATGCCAACTGCGGCAGAAATAAGCCAAATTTTAGCCAAACTCGGGATCA GTGCCCGTGAGTTAATGCGCACCAAAGAAAATGAATACCAAACATTAGGGCTTAGTGATCCATCGCTTAGCGAAGCACAG TTAATTGAAGCTATGGTCAACAACCCTAAACTCCTTGAGCGTCCAATAGTGCTTGCAAATGGCTACGCGGTAATAGGTCG TCCACCAGAAAATGTGCTTACTATTCTGTAA
Upstream 100 bases:
>100_bases TAACCTTGCCAAAAGTGCCCCGAACAACCTGACGGGGCACCTATTTCTCTGTTATTATCCGCGCCATTATTATTTCAGCC TTGATAGAGCCTCTAATACG
Downstream 100 bases:
>100_bases TAGATGCCCCTGATCCGATCGCGATTTTCAATCTTAGGTAATGCCATGACATCAAATACCCTTCTTATTCTTAGCCGCTT TGGCTATCTTGCACTGGTGC
Product: arsenate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MTQATIYHNPRCSKSRETLALLEQQGCDIHVIEYLKNMPTAAEISQILAKLGISARELMRTKENEYQTLGLSDPSLSEAQ LIEAMVNNPKLLERPIVLANGYAVIGRPPENVLTIL
Sequences:
>Translated_116_residues MTQATIYHNPRCSKSRETLALLEQQGCDIHVIEYLKNMPTAAEISQILAKLGISARELMRTKENEYQTLGLSDPSLSEAQ LIEAMVNNPKLLERPIVLANGYAVIGRPPENVLTIL >Mature_115_residues TQATIYHNPRCSKSRETLALLEQQGCDIHVIEYLKNMPTAAEISQILAKLGISARELMRTKENEYQTLGLSDPSLSEAQL IEAMVNNPKLLERPIVLANGYAVIGRPPENVLTIL
Specific function: Unknown
COG id: COG1393
COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ArsC family [H]
Homologues:
Organism=Escherichia coli, GI1788841, Length=115, Percent_Identity=60.8695652173913, Blast_Score=134, Evalue=1e-33, Organism=Escherichia coli, GI1789918, Length=116, Percent_Identity=39.6551724137931, Blast_Score=92, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006659 - InterPro: IPR006660 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03960 ArsC [H]
EC number: NA
Molecular weight: Translated: 12903; Mature: 12772
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQATIYHNPRCSKSRETLALLEQQGCDIHVIEYLKNMPTAAEISQILAKLGISARELMR CCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH TKENEYQTLGLSDPSLSEAQLIEAMVNNPKLLERPIVLANGYAVIGRPPENVLTIL HCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHCCEEEECCEEEECCCCHHHEECC >Mature Secondary Structure TQATIYHNPRCSKSRETLALLEQQGCDIHVIEYLKNMPTAAEISQILAKLGISARELMR CCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH TKENEYQTLGLSDPSLSEAQLIEAMVNNPKLLERPIVLANGYAVIGRPPENVLTIL HCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHCCEEEECCEEEECCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 10493123 [H]