Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120599121

Identifier: 120599121

GI number: 120599121

Start: 2670067

End: 2670825

Strand: Direct

Name: 120599121

Synonym: Sputw3181_2317

Alternate gene names: NA

Gene position: 2670067-2670825 (Clockwise)

Preceding gene: 120599120

Following gene: 120599122

Centisome position: 56.71

GC content: 49.54

Gene sequence:

>759_bases
ATGGACTGGCTTATGATTGCACTCGCTGGCTTTTTAGGCGGCATGCTCAATGCAGTTGCCGGTGGTGGCAGTTTTATTAC
CCTATTAGTGTTAGTGTTTGTCGGGGTTCCACCGATTGCGGCGAATGCCACGGGGACAGCCGCGCTGCTGCCCGGTTATA
TCGCCAGCGCATGGCGTTTTAGAAAGGATATCGAATATCCGGCGAGTCTCAGCCTTAAGGGTCTGATCTTAATTGCTTTA
ATCGGTGGCAGTATTGGCGCAGGTATTTTGCTGACCACCAGCGAGCAAGTCTTCGCAAAACTGATCCCTTGGCTGATTCT
ACTGGCCACCGCGGCCTTTATTGTTGGCCCTTGGTTGCTCAAACGAAGAATCGCTGAGCAAGGCGAAAACACCTCTACGC
CAATGTTAAGTCCGATAATGGCACTGATGCTACTAGCGGCTGTGTGTATCTATGGCGGTTATTTTAATGGTGGCTTAGGT
ATTATTCTGCTGGCGAGTTTTGGTCTAATGGGGCAAACAAACCTACATGGGATGAACGGGCTTAAAAATCTGATTTCTGC
CCTGCTTACCACGATTGCAGTGGTGATTTATGCGGCAGGAGATGCTATCGATAGCCAGTATCTGTTGCTGCTTGCTGTTA
TGGCAATTATCGGTGGTTATGTAGGCGCGGCAATGGCTTATCGTATTTCACAGCCCCTGTTACGCGGTTTTATTGTGATC
GTCGGTCTAGCGATGGCGCTCGGCTTTTTTATCCGCTAA

Upstream 100 bases:

>100_bases
AAATCATCCTGTTAGGGTGAGTGCTTAGATTGACTCATAATAACAGACACATTTTTAGCGCTCTGTTTAACTCTCTCATT
GCCCAAAAGGAGCGGTATCT

Downstream 100 bases:

>100_bases
CGATGCCCCCAGTTTAACCGTTTTCGATTCAACTGTTGACAGGTTAATTGCCCTTAAATGACTGACTTGTTACTCTGAAC
CCTCACTGAGGATGAATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL
IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG
IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI
VGLAMALGFFIR

Sequences:

>Translated_252_residues
MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL
IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG
IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI
VGLAMALGFFIR
>Mature_252_residues
MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL
IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG
IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI
VGLAMALGFFIR

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26288; Mature: 26288

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRF
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RKDIEYPASLSLKGLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL
HHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
LKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLAMALGFFIR
HHHHHHHHHHCC
>Mature Secondary Structure
MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRF
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RKDIEYPASLSLKGLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL
HHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
LKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLAMALGFFIR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA