| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599118
Identifier: 120599118
GI number: 120599118
Start: 2667757
End: 2668779
Strand: Direct
Name: 120599118
Synonym: Sputw3181_2314
Alternate gene names: NA
Gene position: 2667757-2668779 (Clockwise)
Preceding gene: 120599116
Following gene: 120599119
Centisome position: 56.66
GC content: 46.82
Gene sequence:
>1023_bases ATGTTAGCCAAATTTCTCAATAAGCGCAGTCGCAGTCGTAAACATATGCGCGATTATGCCAAAAACGTCTTTGAATATGA CCAGTATTTACTGACCGATTATATCGACAGTGGGATGACAGATGGTTTCGAGAGAGTGAAACAATATCGTGAGTTTGATG AGGATTTTCGCCAGTGGGAATTATTTGGAGCTGAGTTTGGTGTACCCGAGTGTCATTGGGGCTATGTAGCCCAACTTACC TATATTGAATCGGGCTTGCTTGAGCCTAAGCCGCTTATGTGCTCGCTTGCTTACGGTTATTTTGCAACCGCCATTGAATA CTATAAATATTGCTCATCGATAGAAAAAACTGGCGGGATAGCAAACGCTATGTGGTCTACAATCAGCGTGTTTCGGCTTG TGCTGATGCTGTTAGCTGGGCTTAAAAGCGAGGCGGACGAGCTGTACCACGCTGATGCAACCGCGCGGCGTTCGGGCTGG ATTGTTCGCTCCCATGGCTTTATTGGCGATTTTTTGGTGCTGCTGTATGGCCGTTATCTGGGGCATATCGAGCCGCCTTT TACCACGGAAGTGCAAGTGACACTGCGAAAAACTGCTCCTTTCCCCTATGCGTCATTTTTAGATAACTGGGATACACAGG ATATCGAATTCATCAGCACTATGCTGCAAACCCTCTGCGATGATCAGGTAGAACAAGCGATCATCGGGGATAAAAAGTGT TTTTTTGAGTTCCACAATGGACATCTATCATACATACCCTTGACGGCGTTAATGCTGCTAAAGCTTCGTGACCTCAGGGG CTTGCCTAATCCGCAGTTCAGTCATCCGGCCTTTGGCGATGTAACGGCTTTGTTTGAACAAGTCTGCACAGCGTTTAGCG ACTATGTCGCAGCAGAGAAGATCCTGCGGATTGAAGATGCAGCCGATGAGGTGTTAACCAACACATTAACCAGAATGCAA AGCCAAGATTTTGATGCCCATGCTATTTTCGCCAAGCGGCTGCCATCGTTTAGTGCTGGTTAA
Upstream 100 bases:
>100_bases AACGGAGTCGCTTAATGCTTGCTTCAAAAATGCTACAGATAGTCATATTTAGCGCCGTTGCGGTAAACTTGCCGCAGCCT AAATAATAAGGATGCTCAAG
Downstream 100 bases:
>100_bases GATTTTGATTAACCAAATTTTCATAAAAAATGGATAACCAATAAAATCATGATTCTATTAATATTGAGGACCCAAGGCTT AAGGTTGAGCGTATTCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MLAKFLNKRSRSRKHMRDYAKNVFEYDQYLLTDYIDSGMTDGFERVKQYREFDEDFRQWELFGAEFGVPECHWGYVAQLT YIESGLLEPKPLMCSLAYGYFATAIEYYKYCSSIEKTGGIANAMWSTISVFRLVLMLLAGLKSEADELYHADATARRSGW IVRSHGFIGDFLVLLYGRYLGHIEPPFTTEVQVTLRKTAPFPYASFLDNWDTQDIEFISTMLQTLCDDQVEQAIIGDKKC FFEFHNGHLSYIPLTALMLLKLRDLRGLPNPQFSHPAFGDVTALFEQVCTAFSDYVAAEKILRIEDAADEVLTNTLTRMQ SQDFDAHAIFAKRLPSFSAG
Sequences:
>Translated_340_residues MLAKFLNKRSRSRKHMRDYAKNVFEYDQYLLTDYIDSGMTDGFERVKQYREFDEDFRQWELFGAEFGVPECHWGYVAQLT YIESGLLEPKPLMCSLAYGYFATAIEYYKYCSSIEKTGGIANAMWSTISVFRLVLMLLAGLKSEADELYHADATARRSGW IVRSHGFIGDFLVLLYGRYLGHIEPPFTTEVQVTLRKTAPFPYASFLDNWDTQDIEFISTMLQTLCDDQVEQAIIGDKKC FFEFHNGHLSYIPLTALMLLKLRDLRGLPNPQFSHPAFGDVTALFEQVCTAFSDYVAAEKILRIEDAADEVLTNTLTRMQ SQDFDAHAIFAKRLPSFSAG >Mature_340_residues MLAKFLNKRSRSRKHMRDYAKNVFEYDQYLLTDYIDSGMTDGFERVKQYREFDEDFRQWELFGAEFGVPECHWGYVAQLT YIESGLLEPKPLMCSLAYGYFATAIEYYKYCSSIEKTGGIANAMWSTISVFRLVLMLLAGLKSEADELYHADATARRSGW IVRSHGFIGDFLVLLYGRYLGHIEPPFTTEVQVTLRKTAPFPYASFLDNWDTQDIEFISTMLQTLCDDQVEQAIIGDKKC FFEFHNGHLSYIPLTALMLLKLRDLRGLPNPQFSHPAFGDVTALFEQVCTAFSDYVAAEKILRIEDAADEVLTNTLTRMQ SQDFDAHAIFAKRLPSFSAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39015; Mature: 39015
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAKFLNKRSRSRKHMRDYAKNVFEYDQYLLTDYIDSGMTDGFERVKQYREFDEDFRQWE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LFGAEFGVPECHWGYVAQLTYIESGLLEPKPLMCSLAYGYFATAIEYYKYCSSIEKTGGI HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ANAMWSTISVFRLVLMLLAGLKSEADELYHADATARRSGWIVRSHGFIGDFLVLLYGRYL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCEEECCCCHHHHHHHHHHHHH GHIEPPFTTEVQVTLRKTAPFPYASFLDNWDTQDIEFISTMLQTLCDDQVEQAIIGDKKC CCCCCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH FFEFHNGHLSYIPLTALMLLKLRDLRGLPNPQFSHPAFGDVTALFEQVCTAFSDYVAAEK EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ILRIEDAADEVLTNTLTRMQSQDFDAHAIFAKRLPSFSAG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MLAKFLNKRSRSRKHMRDYAKNVFEYDQYLLTDYIDSGMTDGFERVKQYREFDEDFRQWE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LFGAEFGVPECHWGYVAQLTYIESGLLEPKPLMCSLAYGYFATAIEYYKYCSSIEKTGGI HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ANAMWSTISVFRLVLMLLAGLKSEADELYHADATARRSGWIVRSHGFIGDFLVLLYGRYL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCEEECCCCHHHHHHHHHHHHH GHIEPPFTTEVQVTLRKTAPFPYASFLDNWDTQDIEFISTMLQTLCDDQVEQAIIGDKKC CCCCCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH FFEFHNGHLSYIPLTALMLLKLRDLRGLPNPQFSHPAFGDVTALFEQVCTAFSDYVAAEK EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ILRIEDAADEVLTNTLTRMQSQDFDAHAIFAKRLPSFSAG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA