| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599119
Identifier: 120599119
GI number: 120599119
Start: 2668916
End: 2669518
Strand: Direct
Name: 120599119
Synonym: Sputw3181_2315
Alternate gene names: NA
Gene position: 2668916-2669518 (Clockwise)
Preceding gene: 120599118
Following gene: 120599120
Centisome position: 56.68
GC content: 48.59
Gene sequence:
>603_bases ATGTACCAGATTGCGATTGTGATATTTGATGAATTTACCGATATCGATTTCTTCTTAATGCGCGATATTCTCGGCCGTAC AAAAACCGATTGGACAGTAAAAGTACTCGGGACAAAGCCTAGCCACATATCAAGTTTGGGGATGCCGGTTGCAACCGATG GTCATGTCGCTGAAGTCGCTGATGCCGACGTGGTATTATTCAGCAGTGGTTACAAAGGCGTACCTGCGGCACTTGCTGAT ACTGAGTTTATGTCCGCCCTTAAATTAGATCCCACACGACAATTGCTTGGGAGTATCTGCGCGGGGTCATTCTTCTTTGC CAAATTAGGGCTACTCGACAATCTCTCGGCAACGACTCACCCCGATGCAAAACCTGCCCTAGTTGCCATGGGCGTCGATG TAGAAGACTGCGCCCTCGTGATTAATGGCAATATTGCCACTGCGGGCGGCTGCCTTTCCTCACTCTATTTAACGGGTTGG GTTGCGGAGCGTTTATTCGACAGTGCGAAACGCCGCGAAATTCACAGGCAGCTTATTCCTGCTGGGCAAACAGATATTTT TGAAACATTAATCCAATCCTCCATCTCCGCGGCCATTCGTTAA
Upstream 100 bases:
>100_bases ACCAATAAAATCATGATTCTATTAATATTGAGGACCCAAGGCTTAAGGTTGAGCGTATTCAAGCCTTAAGTCATCCACAA TACAAGCCAGAGGAAAGCTT
Downstream 100 bases:
>100_bases AAGTGATGTAGATACTCTCGATGAATGAAAAGGATCCCATGATAAAACTTAAAAATCTTCTCGAAGCTATAAAAGCCGAG CATCAAATCACCACCCAGAA
Product: ThiJ/PfpI domain-containing protein
Products: NA
Alternate protein names: ThiJ/PfpI Family Protein; DJ-1/PfpI Family Protein; ThiJ/PfpI Domain Protein; Transcriptional Regulator; Intracellular Protease/Amidase; AraC Family Transcription Regulator; Transcriptional Regulator AraC Family; DJ-1/PfpI Family; AraC-Family Transcriptional Regulator; AraC Family Transcriptional Regulator
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR
Sequences:
>Translated_200_residues MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR >Mature_200_residues MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVADADVVLFSSGYKGVPAALAD TEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTHPDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGW VAERLFDSAKRREIHRQLIPAGQTDIFETLIQSSISAAIR
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21483; Mature: 21483
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVA CEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEECC DADVVLFSSGYKGVPAALADTEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTH CCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGWVAERLFDSAKRREIHRQLIP CCCCCEEEEECCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC AGQTDIFETLIQSSISAAIR CCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYQIAIVIFDEFTDIDFFLMRDILGRTKTDWTVKVLGTKPSHISSLGMPVATDGHVAEVA CEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEECC DADVVLFSSGYKGVPAALADTEFMSALKLDPTRQLLGSICAGSFFFAKLGLLDNLSATTH CCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PDAKPALVAMGVDVEDCALVINGNIATAGGCLSSLYLTGWVAERLFDSAKRREIHRQLIP CCCCCEEEEECCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC AGQTDIFETLIQSSISAAIR CCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA