| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is estB [H]
Identifier: 120599000
GI number: 120599000
Start: 2534487
End: 2535680
Strand: Direct
Name: estB [H]
Synonym: Sputw3181_2193
Alternate gene names: 120599000
Gene position: 2534487-2535680 (Clockwise)
Preceding gene: 120598992
Following gene: 120599001
Centisome position: 53.83
GC content: 56.28
Gene sequence:
>1194_bases ATGACAACCAACACATTTCCCCTGCCTCGAAGCGTAGTGCCCATACCGCTCTCAGCCCGCATCCAAAACGTTATTGAGCA AGCATTACATGAGCAACGATTAGTGGGTGCTGTCGTGCTGGTCGCTCGGAACTGTGAGCTTATCTACCAGCAGGCAGCAG GTTATGCCGACCGGGAAAGTGCAAGGCCGATGGCGGTGGATACGGTTTTTCGCCTGGCCTCGGTGAGTAAACCTATTGTC TCTGCCGCCGCACTGGTATTGGTAGCACAAGGTCGACTAGAGCTGGACGAGAACATTGGCAACTGGCTGCCTGATTTTCA GCCAAGGTTGGCCGATGGCCGCCTAGCCCGGATCACCGTTCGGCAGTTGCTTAGCCATACGGCCGGCTTGGGTTATCGCT TTTTCGAAGCCGACGAAAAGAGCCCCTACGCGTTGGTGGGTGTATCGGATGGCATGGATGCGTCGGGCATTAGCCTGCAG GAAAACCTTAAGCGCATCGCCAGTGTGTCGCTGTTGTATGAGCCGGGCACAGCTTGGGGCTATTCGCTGGCAACCGATGT GCTGGGTGCATTGATTGAGCGCGTTTATGGTACCTCGCTAAACGAAGCAATACACCATTTGGTGACCGGCCCCTTAGGCA TGAATGATACCGGTTTTGTCGCAGGTGATCCGCAGCGCATGGCCACCGCTTATGTTAACGATGCACCACAGCCACATCAA CTGGCAGAAGGGGAAACCGTCTCACCTTTTGAGGGCACAATTGGTATCAAATACAGCCCAGCTCGTATCTTCGATGCACA GTCTTTTCCATCCGCAGGTGCAGGCATGGCGGGCACGGCCGGGGATTTTCTGCGCCTGTTGGAAGCCCTGCGTCAAGAAG GCGGCGGGCTATTGCCCAAAGAACTGGTGGCAGAAATGGCGCGGGATCAGACAGGAGGATTGGAACTGCCTAATTCACCG GGTTTTGGTTTTGGCCTGGGGTTCTCGGTGCTGCGTGACCCAAAACTTGCCGCTTCTCCCGAGTCAGCAGGCACATGGCG CTGGGGCGGTGCTTACGGCCATTCCTGGTTTGTGGATCGGGCCCAGGGGCTTAGTATGGTGGCTTTTACCAATACCCTGT ATGAGGGCATGTGTGGCCGTTTCGTTACTGGGCTACGGGATGCCGTGTATGACGGGTCTGAGGTGCAGCGATGA
Upstream 100 bases:
>100_bases CGGACACAAAGCTCCGTATATAACGGAACTATACCCTACTTTTTCTTTAATCTAAGGCTTTATATGATCATGGCATAACC AATGAATAAAGGACTTTGCT
Downstream 100 bases:
>100_bases AGTCCACTGCACCAGATCGTCTGCCACTGGCCGCTCTGCTGGCGCTGGCCTTAGCTGGTTTTGTTACCATCCTGACCGAG GCGTTACCCGCCGGCCTTTT
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MTTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRESARPMAVDTVFRLASVSKPIV SAAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITVRQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQ ENLKRIASVSLLYEPGTAWGYSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQ LAEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPKELVAEMARDQTGGLELPNSP GFGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDRAQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR
Sequences:
>Translated_397_residues MTTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRESARPMAVDTVFRLASVSKPIV SAAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITVRQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQ ENLKRIASVSLLYEPGTAWGYSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQ LAEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPKELVAEMARDQTGGLELPNSP GFGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDRAQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR >Mature_396_residues TTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRESARPMAVDTVFRLASVSKPIVS AAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITVRQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQE NLKRIASVSLLYEPGTAWGYSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQL AEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPKELVAEMARDQTGGLELPNSPG FGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDRAQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR
Specific function: Acts on short-chain (C4-C6) fatty acid esters and triglycerides, including tertiary alcohol esters. Activity on p- nitrophenyl esters is generally higher than on o-nitrophenyl esters. Lacks beta-lactamase activity; it hydrolyzes the ester bond of cephalos
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-A beta-lactamase family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=377, Percent_Identity=24.4031830238727, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533026, Length=207, Percent_Identity=27.536231884058, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17550934, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR000871 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 42575; Mature: 42444
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00146 BETA_LACTAMASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRES CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC ARPMAVDTVFRLASVSKPIVSAAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH RQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQENLKRIASVSLLYEPGTAWG HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEECCCCCCH YSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCH LAEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPK HCCCCCCCCCCCCEEEEECCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH ELVAEMARDQTGGLELPNSPGFGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDR HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH AQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR HCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure TTNTFPLPRSVVPIPLSARIQNVIEQALHEQRLVGAVVLVARNCELIYQQAAGYADRES CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC ARPMAVDTVFRLASVSKPIVSAAALVLVAQGRLELDENIGNWLPDFQPRLADGRLARITV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH RQLLSHTAGLGYRFFEADEKSPYALVGVSDGMDASGISLQENLKRIASVSLLYEPGTAWG HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEECCCCCCH YSLATDVLGALIERVYGTSLNEAIHHLVTGPLGMNDTGFVAGDPQRMATAYVNDAPQPHQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCH LAEGETVSPFEGTIGIKYSPARIFDAQSFPSAGAGMAGTAGDFLRLLEALRQEGGGLLPK HCCCCCCCCCCCCEEEEECCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH ELVAEMARDQTGGLELPNSPGFGFGLGFSVLRDPKLAASPESAGTWRWGGAYGHSWFVDR HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH AQGLSMVAFTNTLYEGMCGRFVTGLRDAVYDGSEVQR HCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11472796; 11847270 [H]