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The map label for this gene is sotB [H]

Identifier: 120599001

GI number: 120599001

Start: 2535677

End: 2536894

Strand: Direct

Name: sotB [H]

Synonym: Sputw3181_2194

Alternate gene names: 120599001

Gene position: 2535677-2536894 (Clockwise)

Preceding gene: 120599000

Following gene: 120599002

Centisome position: 53.85

GC content: 55.17

Gene sequence:

>1218_bases
ATGAAGTCCACTGCACCAGATCGTCTGCCACTGGCCGCTCTGCTGGCGCTGGCCTTAGCTGGTTTTGTTACCATCCTGAC
CGAGGCGTTACCCGCCGGCCTTTTACCGCAAATTGGCGCAGGATTGGGTGTTTCAGAAGCGCTTGCTGGTCAGCTTGTGA
CTGTTTATGCCATTGGCTCTCTGCTGATGGCTATTCCGCTGATGACAATTACACAAGGTGTACGGCGCCGACCTTTGTTG
CTGGCAGCAATAGTGGGCTTTGCTGTCGCCAATACAGTAACAACGTTTTCTACCAGTTACACCCTCACCTTGGTGGCCCG
CTTTCTGGCCGGTGTGGCGGCAGGTTTGTTGTGGGCCTTACTGGCAGGTTATGCCAGCCGCATGGTGCCTGAGCACCTTA
AGGGACGTGCTATTGCGATAGCGATGGTCGGTACACCGCTAGCGCTTTCTTTAGGGGTCCCAGCCGGTACCTTGCTCGGC
AATTTGGTCGGATGGCGTGTCTGTTTCGCAATGATGAGTTTGTTAGCGCTGATGCTGATTGTATGGATTCGGCTAAAAGT
GCCGGACTTTGCCGGGCAAGCCACGGGTAAACGGCTGTCACTTGGGCAGGTATTTACGCTGCCGGGTATTCGTCCTGTGC
TGTTTGTGGTGCTGACATTTGTACTCGCACACAACATTCTTTACACCTACATCGCCCCGTTTTTATCGGCTGCCGGAATG
GCAGAGCGAACCGATCTGGTTCTGCTGGTCTTTGGTATGACCGCGCTACTTGGAATTTGGGTTATTGGCGTGTTAATTGA
CCGTCATTTACGTATTCTAACGCTTGCCAGCATAGCGCTGTTTGCCCTGACAGCAATAGTGCTGGGCCTTGCTGGCGACG
TGCCTGTGGCAGTTTATTGCGCAGTGGCTGCCTGGGGGTTGGCATTTGGTGGCGCTGCAACCTTGTTCCAAACGGGACTC
GCTAAGGCGGCCGGATCGGCCGCCGATGTTGCCCAGTCTATGCTGGTTACCGCCTGGAACCTGGCTATCGCAGGTGGTGG
CATCGTCGGTGGTGTATTGCTTGAGCAGCTTGGCGTCAGCTCATTCTCACCGGCTTTACTTATATTGCTGGTGGCAGCAC
TAGTCGTTGTGTGGGCAGCTAGGAAGCACGGGTTTGCCGCACCGGAAGATGCAGCTATACCCTGTCCATCGACGCCCAAG
CAACAGACAGAGGTGTAG

Upstream 100 bases:

>100_bases
TTAGTATGGTGGCTTTTACCAATACCCTGTATGAGGGCATGTGTGGCCGTTTCGTTACTGGGCTACGGGATGCCGTGTAT
GACGGGTCTGAGGTGCAGCG

Downstream 100 bases:

>100_bases
CCATGAACAGCAGGCGTTCACTGCTTTTCATCGCCTTAGGTTTATTCGGTCTGTATGCCGTCGAGTTCGGCGTGATCGGC
ATACTGCCGGCCATCATTCA

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGSLLMAIPLMTITQGVRRRPLL
LAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWALLAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLG
NLVGWRVCFAMMSLLALMLIVWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGM
AERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYCAVAAWGLAFGGAATLFQTGL
AKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVSSFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPK
QQTEV

Sequences:

>Translated_405_residues
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGSLLMAIPLMTITQGVRRRPLL
LAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWALLAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLG
NLVGWRVCFAMMSLLALMLIVWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGM
AERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYCAVAAWGLAFGGAATLFQTGL
AKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVSSFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPK
QQTEV
>Mature_405_residues
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGSLLMAIPLMTITQGVRRRPLL
LAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWALLAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLG
NLVGWRVCFAMMSLLALMLIVWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGM
AERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYCAVAAWGLAFGGAATLFQTGL
AKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVSSFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPK
QQTEV

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=361, Percent_Identity=26.3157894736842, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787808, Length=234, Percent_Identity=29.9145299145299, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787947, Length=265, Percent_Identity=33.5849056603774, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41701; Mature: 41701

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
LLMAIPLMTITQGVRRRPLLLAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWAL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLGNLVGWRVCFAMMSLLALMLI
HHHHHHHHCHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGM
HHHHHCCCCCCCCCCCCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AVAAWGLAFGGAATLFQTGLAKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVS
HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
SFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPKQQTEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSTAPDRLPLAALLALALAGFVTILTEALPAGLLPQIGAGLGVSEALAGQLVTVYAIGS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
LLMAIPLMTITQGVRRRPLLLAAIVGFAVANTVTTFSTSYTLTLVARFLAGVAAGLLWAL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGYASRMVPEHLKGRAIAIAMVGTPLALSLGVPAGTLLGNLVGWRVCFAMMSLLALMLI
HHHHHHHHCHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VWIRLKVPDFAGQATGKRLSLGQVFTLPGIRPVLFVVLTFVLAHNILYTYIAPFLSAAGM
HHHHHCCCCCCCCCCCCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AERTDLVLLVFGMTALLGIWVIGVLIDRHLRILTLASIALFALTAIVLGLAGDVPVAVYC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AVAAWGLAFGGAATLFQTGLAKAAGSAADVAQSMLVTAWNLAIAGGGIVGGVLLEQLGVS
HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
SFSPALLILLVAALVVVWAARKHGFAAPEDAAIPCPSTPKQQTEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA