| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yfiQ [H]
Identifier: 120598980
GI number: 120598980
Start: 2503668
End: 2506367
Strand: Direct
Name: yfiQ [H]
Synonym: Sputw3181_2172
Alternate gene names: 120598980
Gene position: 2503668-2506367 (Clockwise)
Preceding gene: 120598978
Following gene: 120598981
Centisome position: 53.17
GC content: 47.41
Gene sequence:
>2700_bases ATGAGTCAACGTACATTAAACTCCTTATTTAAACCGACTTCCGTTGCCATTATTGGCGCCTCGAATACCGAGAAACGCGC TGGTAATGTGTTGATGAAAAACCTGCTCTCCAGTGGTTTTTCTGGGCCAATTATGCCTGTTACGCCTAAATATCGGGCTG TGATGGGCGTGCTTGCCTATCCTAATATTGAGGCCCTTCCGATAAAACCCGATTTAGCCGTGATTTGTACCCGTGCTTGC CGCGTGCCCGCTATTGTTGAAACCTTAGCTCAGTTTGGTTGTAAAGTGGCCATTATTATGGCCTCAGGTATGGCACAGGA GTTTAATGAGGAGGGTGTGAGTTTGCTCGAACTTACGATGCAACATGCTAAGCGTTATGGCATGCGTATCCTTGGGCCGA ATAGTTTAGGTATGTTATTGCCGCCACTTGGTTTAAATGCCAGTTTAGCCCATGCCAGCGCGCTTCCTGGGAAAATTGCT TTCGTGTCTCAATCCGCCGCCATTTGCACGACGGTACTCGATTGGGCCAATAATAAAGGCATAGGGTTTTCTTCTTTTAT TTCTCTCGGTGACGCCACCGATATTAACTTCGATGAATTACTCGATTACTTAGGCCGCGATAGCCGCACCAGCGCCATTA TGTTGTATATCGATTCAGTCAATGAAAAGCGCCATTTTTTATCCGCCGCCCGCGCTGCTTCTCGCAATAAACCCATCCTC GTCATTAAATCGGGCCGAAGCCCTGAAGGTGCCCGCGCCGCAAAATTGCACACGGGTGGAGTTGGCGGTAATGATGCCGT GTATGAAGCGGCATTTCGCCGCGCAGGTATGTTGCGAGTTAATGATTTAATTGAACTTTTTGCGGCGGTAGAAAGCCTAG CTCATTCAAATCCACTCCAAGGGGAACGCTTAGGGATTATTAGTAATGGTGGCGGCCCTGCCGTATTAGCAGTCGATGAG TTAATTTTACGTGGTGGAAAGCTGGCCGAACTCACAGAGGACACCATTGCCCAGCTTGAGGCCGTGTTACCCAGCACTTG GTCACGGCAAAATCCTGTCGATATTATCGGTGATGCCGATGCGACTCGTTATGCTAAGGCATTGAGTATTTTGATGGATT GTAATGAGTTAGATGCCATATTAGTGTTACATTCACCGTCAGCTCTCGGTGAGAGTGTTGAAATCGCTGATGCATTAATC AAGACCATTCACACCCATCCCAAAAAGAATCGGTTGAATATTCTCACCAACTGGAGCGGGGAAGATTCGGCCTATCAGGC GAGAAAGCGATTTACAAAGGGCGGCATTCCGACCTATCGCACACCTGAAGGTGCCGTGGGTGCGTTTATGCACATGGTTG AATATCGCCGTAACCAAAAATTACTGCAGGAAGTCCCCCAATCCATTCCCGATAATATTCCAACCGATAGTCAAACCGCG CGAAAATTACTGCAAGCTGCGCAAGCTAAAGGAAAATCGGTACTCGAAACCCATGAGGCGATCCCCATTTTGCGTGCTTA CGGCCTCAACACTATTGATACTTGGTTTGTTAAAGATGCCGATGAAGCCGTTGCTATCGCCAATGAGGCGGGTTATCCCT TGGCTTTAAAAGTCCAATCACCCAATATTTTGCATAAATCCGATGTGCATGGGGTCATGCTTAATTTAACGTCGGCTGAA GATATCCGTCATGCGGCGAACGCGATTACGCAAAGGGTGCATCAGGCGAATCCCGACGCCATTATCGAAGGTATGATAGT GCAAAAAATGGCGCTAACGGCGGGTGCACAGGAGATCCGCGTGGCCGTGATAAGCGATCCCGTCTTTGGCCCTGCCATTT GTTTAGGTGAAGGCGGCTCAGAATGGGATCCCACAAACGATGCCGCTGTTGCCCTGCCCCCACTCAATATGGCATTAGCG CGCTATATGGTGATCCAAGCATTAAAGACCCACAAACTAAAAGACCGGCATTTACCCTTAGGTTTAGATATGAATGCCCT GTGTGTGATGCTAACGCAGATCTCCCACATTATTATCGACTGCCCCGAAATTGCCTCATTAGATTTAAATCCCGTATTAG CAGCGGGAGAAAAGATCACCCTGCTCGATGTGAATATTCGCTTGCATGATGCTAATACCGACAGCACTTCCCGCCTCGCG ATCATGCCCTATCCCAAGGAATTAGAAGAAGAAGCCGAACTTAAAAATGGCCTAAAGGTGATGCTAAGGCCAATTTTACC CGAGGATGAACCTAAGCATTTGGCCTTCGATAACTCGCTATCCGATGAAGACAGGTACAAACGCTATTTTGGGGTACGTT CTAAAATGACCCATGAGGAAATGGCGGTATTAACCCAAATCGATTACGCCCGAGAAATGGCGTTTATCGCGACCGCAAAA GGCCCAGATGGTGATGATATCACCCTAGGCGCAGTAAGGGCTTCTATCGATCCCGATAATACAGAAGCCGAATTTGCCAT GGCAGTACGCGGCGATCACCAAGGCATAGGTCTAGGCAAGTTACTACTCGAAAAACTCATTAAGTATTATCAAGCCAACG ATACGGCAGTACTCACAGGTTTTACCATGTTTGAAAACCGTAATATGGCAAGCCTAGCAAAAAGTTTAGGATTTAAAGTC ACCTTCGATATGGAGGAGCATTTGATCAAAATGCATATGGATCTTAAACAAAACCAATAA
Upstream 100 bases:
>100_bases TCAATTCATCATATAGTCTTAGTAGATACAGAAACTTAACTGTGCAGCCATCAAACCCTAGGTTACACTGAAAGCGTCAT TGATTGGGATGGAATCGCTT
Downstream 100 bases:
>100_bases CAAACTGATTTACGGCGATATTAGCAACTGAAATACCGTCAACAATTTGCTTAACCCGTATTTACCGTTGTAAAACTACT CAGGGAAATTCAATGGCGTG
Product: CoA-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 899; Mature: 898
Protein sequence:
>899_residues MSQRTLNSLFKPTSVAIIGASNTEKRAGNVLMKNLLSSGFSGPIMPVTPKYRAVMGVLAYPNIEALPIKPDLAVICTRAC RVPAIVETLAQFGCKVAIIMASGMAQEFNEEGVSLLELTMQHAKRYGMRILGPNSLGMLLPPLGLNASLAHASALPGKIA FVSQSAAICTTVLDWANNKGIGFSSFISLGDATDINFDELLDYLGRDSRTSAIMLYIDSVNEKRHFLSAARAASRNKPIL VIKSGRSPEGARAAKLHTGGVGGNDAVYEAAFRRAGMLRVNDLIELFAAVESLAHSNPLQGERLGIISNGGGPAVLAVDE LILRGGKLAELTEDTIAQLEAVLPSTWSRQNPVDIIGDADATRYAKALSILMDCNELDAILVLHSPSALGESVEIADALI KTIHTHPKKNRLNILTNWSGEDSAYQARKRFTKGGIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPTDSQTA RKLLQAAQAKGKSVLETHEAIPILRAYGLNTIDTWFVKDADEAVAIANEAGYPLALKVQSPNILHKSDVHGVMLNLTSAE DIRHAANAITQRVHQANPDAIIEGMIVQKMALTAGAQEIRVAVISDPVFGPAICLGEGGSEWDPTNDAAVALPPLNMALA RYMVIQALKTHKLKDRHLPLGLDMNALCVMLTQISHIIIDCPEIASLDLNPVLAAGEKITLLDVNIRLHDANTDSTSRLA IMPYPKELEEEAELKNGLKVMLRPILPEDEPKHLAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAK GPDGDDITLGAVRASIDPDNTEAEFAMAVRGDHQGIGLGKLLLEKLIKYYQANDTAVLTGFTMFENRNMASLAKSLGFKV TFDMEEHLIKMHMDLKQNQ
Sequences:
>Translated_899_residues MSQRTLNSLFKPTSVAIIGASNTEKRAGNVLMKNLLSSGFSGPIMPVTPKYRAVMGVLAYPNIEALPIKPDLAVICTRAC RVPAIVETLAQFGCKVAIIMASGMAQEFNEEGVSLLELTMQHAKRYGMRILGPNSLGMLLPPLGLNASLAHASALPGKIA FVSQSAAICTTVLDWANNKGIGFSSFISLGDATDINFDELLDYLGRDSRTSAIMLYIDSVNEKRHFLSAARAASRNKPIL VIKSGRSPEGARAAKLHTGGVGGNDAVYEAAFRRAGMLRVNDLIELFAAVESLAHSNPLQGERLGIISNGGGPAVLAVDE LILRGGKLAELTEDTIAQLEAVLPSTWSRQNPVDIIGDADATRYAKALSILMDCNELDAILVLHSPSALGESVEIADALI KTIHTHPKKNRLNILTNWSGEDSAYQARKRFTKGGIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPTDSQTA RKLLQAAQAKGKSVLETHEAIPILRAYGLNTIDTWFVKDADEAVAIANEAGYPLALKVQSPNILHKSDVHGVMLNLTSAE DIRHAANAITQRVHQANPDAIIEGMIVQKMALTAGAQEIRVAVISDPVFGPAICLGEGGSEWDPTNDAAVALPPLNMALA RYMVIQALKTHKLKDRHLPLGLDMNALCVMLTQISHIIIDCPEIASLDLNPVLAAGEKITLLDVNIRLHDANTDSTSRLA IMPYPKELEEEAELKNGLKVMLRPILPEDEPKHLAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAK GPDGDDITLGAVRASIDPDNTEAEFAMAVRGDHQGIGLGKLLLEKLIKYYQANDTAVLTGFTMFENRNMASLAKSLGFKV TFDMEEHLIKMHMDLKQNQ >Mature_898_residues SQRTLNSLFKPTSVAIIGASNTEKRAGNVLMKNLLSSGFSGPIMPVTPKYRAVMGVLAYPNIEALPIKPDLAVICTRACR VPAIVETLAQFGCKVAIIMASGMAQEFNEEGVSLLELTMQHAKRYGMRILGPNSLGMLLPPLGLNASLAHASALPGKIAF VSQSAAICTTVLDWANNKGIGFSSFISLGDATDINFDELLDYLGRDSRTSAIMLYIDSVNEKRHFLSAARAASRNKPILV IKSGRSPEGARAAKLHTGGVGGNDAVYEAAFRRAGMLRVNDLIELFAAVESLAHSNPLQGERLGIISNGGGPAVLAVDEL ILRGGKLAELTEDTIAQLEAVLPSTWSRQNPVDIIGDADATRYAKALSILMDCNELDAILVLHSPSALGESVEIADALIK TIHTHPKKNRLNILTNWSGEDSAYQARKRFTKGGIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPTDSQTAR KLLQAAQAKGKSVLETHEAIPILRAYGLNTIDTWFVKDADEAVAIANEAGYPLALKVQSPNILHKSDVHGVMLNLTSAED IRHAANAITQRVHQANPDAIIEGMIVQKMALTAGAQEIRVAVISDPVFGPAICLGEGGSEWDPTNDAAVALPPLNMALAR YMVIQALKTHKLKDRHLPLGLDMNALCVMLTQISHIIIDCPEIASLDLNPVLAAGEKITLLDVNIRLHDANTDSTSRLAI MPYPKELEEEAELKNGLKVMLRPILPEDEPKHLAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAKG PDGDDITLGAVRASIDPDNTEAEFAMAVRGDHQGIGLGKLLLEKLIKYYQANDTAVLTGFTMFENRNMASLAKSLGFKVT FDMEEHLIKMHMDLKQNQ
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=899, Percent_Identity=51.1679644048943, Blast_Score=911, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR011761 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR016102 [H]
Pfam domain/function: PF00583 Acetyltransf_1 [H]
EC number: NA
Molecular weight: Translated: 97654; Mature: 97523
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRTLNSLFKPTSVAIIGASNTEKRAGNVLMKNLLSSGFSGPIMPVTPKYRAVMGVLAY CCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC PNIEALPIKPDLAVICTRACRVPAIVETLAQFGCKVAIIMASGMAQEFNEEGVSLLELTM CCCEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHH QHAKRYGMRILGPNSLGMLLPPLGLNASLAHASALPGKIAFVSQSAAICTTVLDWANNKG HHHHHCCCEEECCCCCCCEECCCCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCC IGFSSFISLGDATDINFDELLDYLGRDSRTSAIMLYIDSVNEKRHFLSAARAASRNKPIL CCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE VIKSGRSPEGARAAKLHTGGVGGNDAVYEAAFRRAGMLRVNDLIELFAAVESLAHSNPLQ EEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC GERLGIISNGGGPAVLAVDELILRGGKLAELTEDTIAQLEAVLPSTWSRQNPVDIIGDAD CCEEEEEECCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC ATRYAKALSILMDCNELDAILVLHSPSALGESVEIADALIKTIHTHPKKNRLNILTNWSG HHHHHHHHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC EDSAYQARKRFTKGGIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPTDSQTA CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RKLLQAAQAKGKSVLETHEAIPILRAYGLNTIDTWFVKDADEAVAIANEAGYPLALKVQS HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCEEEEECC PNILHKSDVHGVMLNLTSAEDIRHAANAITQRVHQANPDAIIEGMIVQKMALTAGAQEIR CCCEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEE VAVISDPVFGPAICLGEGGSEWDPTNDAAVALPPLNMALARYMVIQALKTHKLKDRHLPL EEEEECCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCC GLDMNALCVMLTQISHIIIDCPEIASLDLNPVLAAGEKITLLDVNIRLHDANTDSTSRLA CCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHCCCEEEEEEEEEEEEECCCCCCCEEE IMPYPKELEEEAELKNGLKVMLRPILPEDEPKHLAFDNSLSDEDRYKRYFGVRSKMTHEE EECCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHH MAVLTQIDYAREMAFIATAKGPDGDDITLGAVRASIDPDNTEAEFAMAVRGDHQGIGLGK HHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHH LLLEKLIKYYQANDTAVLTGFTMFENRNMASLAKSLGFKVTFDMEEHLIKMHMDLKQNQ HHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCEEEECHHHHHHHHHHHHCCCC >Mature Secondary Structure SQRTLNSLFKPTSVAIIGASNTEKRAGNVLMKNLLSSGFSGPIMPVTPKYRAVMGVLAY CCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC PNIEALPIKPDLAVICTRACRVPAIVETLAQFGCKVAIIMASGMAQEFNEEGVSLLELTM CCCEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHH QHAKRYGMRILGPNSLGMLLPPLGLNASLAHASALPGKIAFVSQSAAICTTVLDWANNKG HHHHHCCCEEECCCCCCCEECCCCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCC IGFSSFISLGDATDINFDELLDYLGRDSRTSAIMLYIDSVNEKRHFLSAARAASRNKPIL CCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE VIKSGRSPEGARAAKLHTGGVGGNDAVYEAAFRRAGMLRVNDLIELFAAVESLAHSNPLQ EEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC GERLGIISNGGGPAVLAVDELILRGGKLAELTEDTIAQLEAVLPSTWSRQNPVDIIGDAD CCEEEEEECCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC ATRYAKALSILMDCNELDAILVLHSPSALGESVEIADALIKTIHTHPKKNRLNILTNWSG HHHHHHHHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC EDSAYQARKRFTKGGIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPTDSQTA CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RKLLQAAQAKGKSVLETHEAIPILRAYGLNTIDTWFVKDADEAVAIANEAGYPLALKVQS HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCEEEEECC PNILHKSDVHGVMLNLTSAEDIRHAANAITQRVHQANPDAIIEGMIVQKMALTAGAQEIR CCCEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEE VAVISDPVFGPAICLGEGGSEWDPTNDAAVALPPLNMALARYMVIQALKTHKLKDRHLPL EEEEECCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCC GLDMNALCVMLTQISHIIIDCPEIASLDLNPVLAAGEKITLLDVNIRLHDANTDSTSRLA CCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHCCCEEEEEEEEEEEEECCCCCCCEEE IMPYPKELEEEAELKNGLKVMLRPILPEDEPKHLAFDNSLSDEDRYKRYFGVRSKMTHEE EECCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHH MAVLTQIDYAREMAFIATAKGPDGDDITLGAVRASIDPDNTEAEFAMAVRGDHQGIGLGK HHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHH LLLEKLIKYYQANDTAVLTGFTMFENRNMASLAKSLGFKVTFDMEEHLIKMHMDLKQNQ HHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCEEEECHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]