Click here to switch to the map view.

The map label for this gene is 120598964

Identifier: 120598964

GI number: 120598964

Start: 2482980

End: 2483546

Strand: Direct

Name: 120598964

Synonym: Sputw3181_2156

Alternate gene names: NA

Gene position: 2482980-2483546 (Clockwise)

Preceding gene: 120598963

Following gene: 120598966

Centisome position: 52.74

GC content: 47.97

Gene sequence:

>567_bases
ATGGTGAGTCTTCTTTGTGCGGGTTTGTATGTCGCAGGCTTAGCAAGCCCTGCTGTCGATAACCTACTCGCCTATCGCCG
CAGTGCCATTAGTGAGGGGGAATGGTGGCGATTAATCAGTGGAAATTTACTGCACACGAATCAATGGCATCTATTGATGA
ACCTTGCAGGGCTGTGGGTGGTGCTATTTTTGCACCATTTTCATTATCATCTCAAAGGCTTAAGTGCACTATTTTTCGTG
TTATGTTTACTCGAAGGTATAGGCTTGTATTTAGGCTATCCGCAATTGCTTGGTTATGTCGGCTTAAGCGGTATGTTGCA
TGGCTTGTTCGCCTACGGCGCAGTGCAGGATATTGTCCGTAAGCTGCGCTCAGGCTATCTGCTGCTCGTTGGCGTTATCA
TCAAGGTCGGTTACGAACAGCTTTATGGTGCCAGCAATGATGTCACCGCCATGATAGGTGCGCGCGTAGCAACCGAGGCG
CATTTGGTCGGCTTAATCTGCGGGCTGATTTGCGCTTTAGCGGTGTTTATTAAGCTTAAATTAGAACACTCGAAAGGCAC
CATTTAG

Upstream 100 bases:

>100_bases
GTGGATTAGACGACTATCTACAGAATAAAGCGGCGGTTATGGCTGAGCTTGACGCTAGCGAGCCTAAAGCATGATACGCA
GTCCCTATTGGGTCGCACTG

Downstream 100 bases:

>100_bases
CCCCCATCTGCGGATATTAAAAAGCCGTCGTAGCATGATTGCTAGACGGCTTTTTAATAATGTTAACCGCAATAATATCG
CTACGCTTTGATCAACAATT

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MVSLLCAGLYVAGLASPAVDNLLAYRRSAISEGEWWRLISGNLLHTNQWHLLMNLAGLWVVLFLHHFHYHLKGLSALFFV
LCLLEGIGLYLGYPQLLGYVGLSGMLHGLFAYGAVQDIVRKLRSGYLLLVGVIIKVGYEQLYGASNDVTAMIGARVATEA
HLVGLICGLICALAVFIKLKLEHSKGTI

Sequences:

>Translated_188_residues
MVSLLCAGLYVAGLASPAVDNLLAYRRSAISEGEWWRLISGNLLHTNQWHLLMNLAGLWVVLFLHHFHYHLKGLSALFFV
LCLLEGIGLYLGYPQLLGYVGLSGMLHGLFAYGAVQDIVRKLRSGYLLLVGVIIKVGYEQLYGASNDVTAMIGARVATEA
HLVGLICGLICALAVFIKLKLEHSKGTI
>Mature_188_residues
MVSLLCAGLYVAGLASPAVDNLLAYRRSAISEGEWWRLISGNLLHTNQWHLLMNLAGLWVVLFLHHFHYHLKGLSALFFV
LCLLEGIGLYLGYPQLLGYVGLSGMLHGLFAYGAVQDIVRKLRSGYLLLVGVIIKVGYEQLYGASNDVTAMIGARVATEA
HLVGLICGLICALAVFIKLKLEHSKGTI

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20536; Mature: 20536

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLLCAGLYVAGLASPAVDNLLAYRRSAISEGEWWRLISGNLLHTNQWHLLMNLAGLWV
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCEEECCHHHHHHHHHHHHH
VLFLHHFHYHLKGLSALFFVLCLLEGIGLYLGYPQLLGYVGLSGMLHGLFAYGAVQDIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRSGYLLLVGVIIKVGYEQLYGASNDVTAMIGARVATEAHLVGLICGLICALAVFIKLK
HHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEHSKGTI
HCCCCCCC
>Mature Secondary Structure
MVSLLCAGLYVAGLASPAVDNLLAYRRSAISEGEWWRLISGNLLHTNQWHLLMNLAGLWV
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCEEECCHHHHHHHHHHHHH
VLFLHHFHYHLKGLSALFFVLCLLEGIGLYLGYPQLLGYVGLSGMLHGLFAYGAVQDIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRSGYLLLVGVIIKVGYEQLYGASNDVTAMIGARVATEAHLVGLICGLICALAVFIKLK
HHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEHSKGTI
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA