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The map label for this gene is yqfA [H]

Identifier: 120598896

GI number: 120598896

Start: 2402963

End: 2403646

Strand: Direct

Name: yqfA [H]

Synonym: Sputw3181_2088

Alternate gene names: 120598896

Gene position: 2402963-2403646 (Clockwise)

Preceding gene: 120598886

Following gene: 120598901

Centisome position: 51.04

GC content: 39.62

Gene sequence:

>684_bases
ATGCCAAGCCAAAGTATTATCGAGCAACAAAACTCAACAAAAACCAATACTAAATTTATGCCATATAGTACTAATGAAGA
GATAGCTAACAGTGTATCCCATGGCCTAGGTGTGATCGCAGGGATAGTGGCATTGGTGCTAATGCTGCTAAAAAGCCAAG
ACCATCTTACGATAATTCAACTTACGGGCGTTTTCGTTTACGGTGCAAGTATCATAGTGCTTTTTCTATGTTCAACCTTG
TACCACAGTGTTAGCCATTCAGGCTGGAAACATAAACTTAAGATCGCTGATCACTGTGCAATTTACTGCCTGATTGCAGG
AACTTACACACCTTTGATGCTGATAAGCCTACAGGGAACACAATCGATAGTGATTTTAACGGCGATTTGGTCGCTAGCAA
TTGGCGGGATTTTGTTCAAAACATTATTTATTCATAAGTTTAAAAAACTCAGTTTAGCGCTATATCTGACAATGGGGTGG
CTATGCGTGACTATCATAGGTGACTTAACCACAGCCATGTCAACACTTGGGTTTAACTTATTGATTTTAGGCGGACTATT
TTACACCCTAGGCGTCATTTTCTATGTGGGGAAACGCATTCCATTCAACCATGCAATTTGGCATCTGTTTGTATTGGGAG
GTGCTATGAGCCATTTTTTTTGCATTTACTTAACGGTTATTTAA

Upstream 100 bases:

>100_bases
GCAAGCTGCATATTTAGCTTACAAGTGTACGCTTAAATATGGTGATTTATTTTGCTAACTGGTAAACTCTATTACCATCG
TTTGAAAGTGCGTATCCACC

Downstream 100 bases:

>100_bases
ATACGGATATTCAAGCTGATAAATTGGAATCAAAGCATCCTGCCAAGTGCTCAATTAAGGTTATTGAGCGCGGTAAATAG
CGACATTAATTGTGTGGCTT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPSQSIIEQQNSTKTNTKFMPYSTNEEIANSVSHGLGVIAGIVALVLMLLKSQDHLTIIQLTGVFVYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLALYLTMGW
LCVTIIGDLTTAMSTLGFNLLILGGLFYTLGVIFYVGKRIPFNHAIWHLFVLGGAMSHFFCIYLTVI

Sequences:

>Translated_227_residues
MPSQSIIEQQNSTKTNTKFMPYSTNEEIANSVSHGLGVIAGIVALVLMLLKSQDHLTIIQLTGVFVYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLALYLTMGW
LCVTIIGDLTTAMSTLGFNLLILGGLFYTLGVIFYVGKRIPFNHAIWHLFVLGGAMSHFFCIYLTVI
>Mature_226_residues
PSQSIIEQQNSTKTNTKFMPYSTNEEIANSVSHGLGVIAGIVALVLMLLKSQDHLTIIQLTGVFVYGASIIVLFLCSTLY
HSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLALYLTMGWL
CVTIIGDLTTAMSTLGFNLLILGGLFYTLGVIFYVGKRIPFNHAIWHLFVLGGAMSHFFCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=223, Percent_Identity=32.7354260089686, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI154759275, Length=222, Percent_Identity=29.2792792792793, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI154759277, Length=247, Percent_Identity=26.7206477732794, Blast_Score=88, Evalue=5e-18,
Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=52.9126213592233, Blast_Score=207, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI71996356, Length=232, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24640324, Length=248, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25006; Mature: 24875

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQSIIEQQNSTKTNTKFMPYSTNEEIANSVSHGLGVIAGIVALVLMLLKSQDHLTIIQ
CCCHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGVFVYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKKLSLALYLTMGWLCVTIIGDLTTAMSTLGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILGGLFYTLGVIFYVGKRIPFNHAIWHLFVLGGAMSHFFCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSQSIIEQQNSTKTNTKFMPYSTNEEIANSVSHGLGVIAGIVALVLMLLKSQDHLTIIQ
CCHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGVFVYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKKLSLALYLTMGWLCVTIIGDLTTAMSTLGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILGGLFYTLGVIFYVGKRIPFNHAIWHLFVLGGAMSHFFCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]