Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 120598886

GI number: 120598886

Start: 2390923

End: 2391834

Strand: Direct

Name: yeeY [H]

Synonym: Sputw3181_2078

Alternate gene names: 120598886

Gene position: 2390923-2391834 (Clockwise)

Preceding gene: 120598885

Following gene: 120598896

Centisome position: 50.78

GC content: 44.08

Gene sequence:

>912_bases
ATGACTCGAGCTAAATCCACTCTGGAACAATGGCGTATTTTACAAGCAGTTGTCGATTTTGGAGGCTATGCCCAAGCGGC
AGAAAAACTCAATAAGAGTCAATCATCTCTCAACCATGCGGTTGCCAAATTACAACACCAGCTAGGTATCGAACTACTCG
AAGTCAAAGGCCGTAAAGCCTATCTCACCCCGCAGGGCGAAGTGCTACTGCGCCGCTCACGGCATGTCACCCAAGCCGTT
AATGAATTGGAACAACTTGCCAGCAATCTAGAGCAAGGCTGGGAACCCACACTCACCATTGCCCGTGAAATCATTTATCC
AATGGAAAGTTTAGTGTCAGCTCTCAATGCTTTTTTACCCCATAGCCGCGGCACCCGCATTATTATGCTGGATTCGGTAA
TTACAGGCACCCAAGAACTTATCGCGCAAAATAAAGTTGATATTGCTATCTGTGCGGGTATTGCACCTAAGGGATATTTA
GCGGAGCCTCTATGTGAAGAGGAATTGTATCTGGTATGCCACCCAACACATCCTCTAGCGGACTTAGGGATTATTGAAGA
CGATAAACTACTAGCGCAATATTTACAGCTAGTGATTAAAGATACAGGCGTACAGTCAAATGTTGATATTGGTTGGTTAA
AAGCAGAACAACGCTGGACGGTTTCTAATTTCCACGAAGCTAAAGTGATTTTAAATCGTGGTATTGGTTTTTGCTGGATC
CCATCGTTTTTAGTACAGGAGGAATTATCATCGGGTAATTTAGTCCGTTTACATCTCGAAGGTAGTCAAAAACGTCGAAT
AATGTTGAGTCTGGTGATCCCAAACCGAGATAACCAAGGCCCGGCTTCTAAATTGCTCGCTTCGTTCATTTTACGACATC
ATGGGATCGCAATACCAAATACAGGTCATTAA

Upstream 100 bases:

>100_bases
CCATTAGCGCAATAGTCTTTCATTTAATACCGTAATTTAATTGAAAAATAGATAAGAAGTCGACATTATAAGCTAAATCT
ATCGCTTTTTTGGGACTATT

Downstream 100 bases:

>100_bases
AAAAACTGAATATGCACATTTACTTTAGTTGATTTCAAAAGGTGTTAGAGGCTTGAAACTGGCTGATTCAATTGTGCAAC
CGCAGCGTAATAACGGGTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTRAKSTLEQWRILQAVVDFGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVKGRKAYLTPQGEVLLRRSRHVTQAV
NELEQLASNLEQGWEPTLTIAREIIYPMESLVSALNAFLPHSRGTRIIMLDSVITGTQELIAQNKVDIAICAGIAPKGYL
AEPLCEEELYLVCHPTHPLADLGIIEDDKLLAQYLQLVIKDTGVQSNVDIGWLKAEQRWTVSNFHEAKVILNRGIGFCWI
PSFLVQEELSSGNLVRLHLEGSQKRRIMLSLVIPNRDNQGPASKLLASFILRHHGIAIPNTGH

Sequences:

>Translated_303_residues
MTRAKSTLEQWRILQAVVDFGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVKGRKAYLTPQGEVLLRRSRHVTQAV
NELEQLASNLEQGWEPTLTIAREIIYPMESLVSALNAFLPHSRGTRIIMLDSVITGTQELIAQNKVDIAICAGIAPKGYL
AEPLCEEELYLVCHPTHPLADLGIIEDDKLLAQYLQLVIKDTGVQSNVDIGWLKAEQRWTVSNFHEAKVILNRGIGFCWI
PSFLVQEELSSGNLVRLHLEGSQKRRIMLSLVIPNRDNQGPASKLLASFILRHHGIAIPNTGH
>Mature_302_residues
TRAKSTLEQWRILQAVVDFGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVKGRKAYLTPQGEVLLRRSRHVTQAVN
ELEQLASNLEQGWEPTLTIAREIIYPMESLVSALNAFLPHSRGTRIIMLDSVITGTQELIAQNKVDIAICAGIAPKGYLA
EPLCEEELYLVCHPTHPLADLGIIEDDKLLAQYLQLVIKDTGVQSNVDIGWLKAEQRWTVSNFHEAKVILNRGIGFCWIP
SFLVQEELSSGNLVRLHLEGSQKRRIMLSLVIPNRDNQGPASKLLASFILRHHGIAIPNTGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=302, Percent_Identity=29.8013245033113, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789492, Length=284, Percent_Identity=26.056338028169, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787949, Length=252, Percent_Identity=25.3968253968254, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790262, Length=185, Percent_Identity=29.1891891891892, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786508, Length=257, Percent_Identity=22.568093385214, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786401, Length=262, Percent_Identity=26.3358778625954, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786448, Length=260, Percent_Identity=26.1538461538462, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33749; Mature: 33618

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAKSTLEQWRILQAVVDFGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVKGRKA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEE
YLTPQGEVLLRRSRHVTQAVNELEQLASNLEQGWEPTLTIAREIIYPMESLVSALNAFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
HSRGTRIIMLDSVITGTQELIAQNKVDIAICAGIAPKGYLAEPLCEEELYLVCHPTHPLA
CCCCCEEEEECCHHHCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHH
DLGIIEDDKLLAQYLQLVIKDTGVQSNVDIGWLKAEQRWTVSNFHEAKVILNRGIGFCWI
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH
PSFLVQEELSSGNLVRLHLEGSQKRRIMLSLVIPNRDNQGPASKLLASFILRHHGIAIPN
HHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
TGH
CCC
>Mature Secondary Structure 
TRAKSTLEQWRILQAVVDFGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVKGRKA
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEE
YLTPQGEVLLRRSRHVTQAVNELEQLASNLEQGWEPTLTIAREIIYPMESLVSALNAFLP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
HSRGTRIIMLDSVITGTQELIAQNKVDIAICAGIAPKGYLAEPLCEEELYLVCHPTHPLA
CCCCCEEEEECCHHHCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHH
DLGIIEDDKLLAQYLQLVIKDTGVQSNVDIGWLKAEQRWTVSNFHEAKVILNRGIGFCWI
HCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH
PSFLVQEELSSGNLVRLHLEGSQKRRIMLSLVIPNRDNQGPASKLLASFILRHHGIAIPN
HHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
TGH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]