Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120598840

Identifier: 120598840

GI number: 120598840

Start: 2341848

End: 2342339

Strand: Direct

Name: 120598840

Synonym: Sputw3181_2028

Alternate gene names: NA

Gene position: 2341848-2342339 (Clockwise)

Preceding gene: 120598839

Following gene: 120598845

Centisome position: 49.74

GC content: 51.02

Gene sequence:

>492_bases
ATGAGTAAGACAGATGATTTGGCACAACAAAGATCGCGCGCTGCAGAAAGTAGGGAGAAATGTGCTGACTGGAAAGCTCT
GTTGGAGCGTATTCCCTACGCACAGCACCTTGGACTTCAGGTACAGTGCGGTGATGCAGTTGTATTGGTTTACTTGCCGT
GTAATGAAACGCTGATTGGCAACTTCATGCTACCAGCCCTCCATGGAGGTGTAGTTGGAGCCCTGATTGAACTCACCGCT
CGGGTGGCTGCACAGAGCAAAGATAGAGATAAACGTTGCCCGCGTATCATCGACAGCCACGTAAACTATCTTCGTTCCGC
GAAGGCCCAATCGACTTTCGCGAGCGCAGAAATTGTTCGGCAAGGCAGGCGGTCCAGCTTGGTCAGTGTGACCTGCTGGC
AGAACGATAAAAGCAAACCGATCGCTAGTGGTCAGGTTCAGTTGTTACTCCCGACAATCGCCGCCGAACAAGAAGAACTT
CATGACTCATAA

Upstream 100 bases:

>100_bases
GCGAGGCTGATAGCGAATTATTGGCTACGGCAAAGGCCACCTTCATGAGAAACACTCATGGACAGCAATTCCACTCAGAT
GGATTAAAGAAGAACAGCGT

Downstream 100 bases:

>100_bases
GGGCTTCAATCCTGAACACTGCGAATTCTGGTCGCTCACGATTTTCATCATTGAACCGCTGCGCCGCTAGGACGCAGCGA
ATTGTGTGCAGAGGGTCACG

Product: hypothetical protein

Products: NA

Alternate protein names: Thioesterase Family Protein; Phenylacetic Acid Degradation-Related Protein; Thioesterase Superfamily; Phenylacetic Acid Degradation-Like Protein; Thioesterase Family Protein Domain Protein; Protein Possibly Involved In Aromatic Compounds Catabolism

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKTDDLAQQRSRAAESREKCADWKALLERIPYAQHLGLQVQCGDAVVLVYLPCNETLIGNFMLPALHGGVVGALIELTA
RVAAQSKDRDKRCPRIIDSHVNYLRSAKAQSTFASAEIVRQGRRSSLVSVTCWQNDKSKPIASGQVQLLLPTIAAEQEEL
HDS

Sequences:

>Translated_163_residues
MSKTDDLAQQRSRAAESREKCADWKALLERIPYAQHLGLQVQCGDAVVLVYLPCNETLIGNFMLPALHGGVVGALIELTA
RVAAQSKDRDKRCPRIIDSHVNYLRSAKAQSTFASAEIVRQGRRSSLVSVTCWQNDKSKPIASGQVQLLLPTIAAEQEEL
HDS
>Mature_162_residues
SKTDDLAQQRSRAAESREKCADWKALLERIPYAQHLGLQVQCGDAVVLVYLPCNETLIGNFMLPALHGGVVGALIELTAR
VAAQSKDRDKRCPRIIDSHVNYLRSAKAQSTFASAEIVRQGRRSSLVSVTCWQNDKSKPIASGQVQLLLPTIAAEQEELH
DS

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17940; Mature: 17808

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTDDLAQQRSRAAESREKCADWKALLERIPYAQHLGLQVQCGDAVVLVYLPCNETLIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCEEEEEEECCCCHHHH
NFMLPALHGGVVGALIELTARVAAQSKDRDKRCPRIIDSHVNYLRSAKAQSTFASAEIVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGRRSSLVSVTCWQNDKSKPIASGQVQLLLPTIAAEQEELHDS
CCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
SKTDDLAQQRSRAAESREKCADWKALLERIPYAQHLGLQVQCGDAVVLVYLPCNETLIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCEEEEEEECCCCHHHH
NFMLPALHGGVVGALIELTARVAAQSKDRDKRCPRIIDSHVNYLRSAKAQSTFASAEIVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGRRSSLVSVTCWQNDKSKPIASGQVQLLLPTIAAEQEELHDS
CCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA