| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598801
Identifier: 120598801
GI number: 120598801
Start: 2303301
End: 2303624
Strand: Direct
Name: 120598801
Synonym: Sputw3181_1987
Alternate gene names: NA
Gene position: 2303301-2303624 (Clockwise)
Preceding gene: 120598799
Following gene: 120598802
Centisome position: 48.92
GC content: 40.43
Gene sequence:
>324_bases ATGGCTGAGGACAGAAAAATTGCCGTGTTGTGCCGTATCGAGCCAGGTTGTCTTGGTCCTGATGGAAAAGATCATATTGA AGCTTTCTGTGCTTTAGCACAAAAGGCGATGCAACATTTTGATGTGGATGTTGGAACTTGGTTACTTACACCAAGGTACG ATAAAACACTCGATGAAATGCAATATAGTGTGGCAAATAAACTGCTTTCACGGACACAGGCGAGTAAATACTTTCATCTG ATTGGGCGTGATATTGAGGTTTTTGAAGAACGGTTTGAAAATAAATTAGCGTCACTGATTAATCTTTATCTAGCGCGAAA GTGA
Upstream 100 bases:
>100_bases ATTGATACAAAGCACGTGACATATACATACACTCACGTAAAATCAGTCATTCTGATATGTATCGTATGAGTTTCGTTGTA ATCATTTTAGGGATATAAAA
Downstream 100 bases:
>100_bases TAACGTATTGATGTAATAAATTTTTATCGCTGTCTAAAAAGATTCCCATAACTTATGTAGCCTACCTAGCTTGCTACGCT AAACACGAAATGAACTAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MAEDRKIAVLCRIEPGCLGPDGKDHIEAFCALAQKAMQHFDVDVGTWLLTPRYDKTLDEMQYSVANKLLSRTQASKYFHL IGRDIEVFEERFENKLASLINLYLARK
Sequences:
>Translated_107_residues MAEDRKIAVLCRIEPGCLGPDGKDHIEAFCALAQKAMQHFDVDVGTWLLTPRYDKTLDEMQYSVANKLLSRTQASKYFHL IGRDIEVFEERFENKLASLINLYLARK >Mature_106_residues AEDRKIAVLCRIEPGCLGPDGKDHIEAFCALAQKAMQHFDVDVGTWLLTPRYDKTLDEMQYSVANKLLSRTQASKYFHLI GRDIEVFEERFENKLASLINLYLARK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12320; Mature: 12189
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEDRKIAVLCRIEPGCLGPDGKDHIEAFCALAQKAMQHFDVDVGTWLLTPRYDKTLDEM CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHH QYSVANKLLSRTQASKYFHLIGRDIEVFEERFENKLASLINLYLARK HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AEDRKIAVLCRIEPGCLGPDGKDHIEAFCALAQKAMQHFDVDVGTWLLTPRYDKTLDEM CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHH QYSVANKLLSRTQASKYFHLIGRDIEVFEERFENKLASLINLYLARK HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA