| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is yqaB [H]
Identifier: 120598762
GI number: 120598762
Start: 2252898
End: 2253503
Strand: Direct
Name: yqaB [H]
Synonym: Sputw3181_1947
Alternate gene names: 120598762
Gene position: 2252898-2253503 (Clockwise)
Preceding gene: 120598761
Following gene: 120598763
Centisome position: 47.85
GC content: 46.86
Gene sequence:
>606_bases ATGTATACAAATTTTGATGGCATTATTTTTGATATGGATGGCACTTTGGTGGACAGCGGTCAGCTACATGAACAGGCATG GCGACAAACACTAAGTCACTTTGGGATCCCGATTGATGCAGCGTTAATGCGCTCTCTTGCTGGCGTACCGACCATTGGAA CACTTGAAATACTTATCACCCATTTTGGCGTCACGCCAACCGCAAGCTATGAAGCGATGAATGAATATAAAGAAGCCTTG GTACGAGAAACCATGCATTTATATGTTAAGCCGACTCGTTTAATCGAGTTTGCGAAGCAAAATAAGGGGAAGCGTCCTAT GGCGGTGGGGACGGGGGCCTATACTGGCGAAGCGGTTGAGATATTAACCTTGTGTGGTTTGCTTGAACTGGTCGATCATG TGGTAGGCGCAGATCAGGTCAGTGAACCCAAACCTGCTCCAGATACCTTTTTACGCTGCGCCGAATTGATGGGGATCGCG CCAGCGCGCTGCATCGTATTTGAAGATGCAAAAGCAGGTATTCAAGCGGCTAAGTCAGCAGGAATGTTTGTCGTCGATGT CCTTGTCGATTTTGATATCCAAAATGATTACTTTCTGACGGCATAG
Upstream 100 bases:
>100_bases TCTTAAGTTAAGAGCCGCCCTAGGGCGGCTTTGTATTTTATGTCCGAAGCTGAGTTCTTTATTTGCTAATGGTTCCCCGT CCAAGAGGTTGAAACACAAC
Downstream 100 bases:
>100_bases GCTTGGTTCGATTATTGGCTTATCCCTAAAAACCTAAACCAATGTTTTTCTTTGGTTGAAATCCCCATAAATTCTTGGCT TTATGAAAATTACCTGTTAC
Product: beta-phosphoglucomutase family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MYTNFDGIIFDMDGTLVDSGQLHEQAWRQTLSHFGIPIDAALMRSLAGVPTIGTLEILITHFGVTPTASYEAMNEYKEAL VRETMHLYVKPTRLIEFAKQNKGKRPMAVGTGAYTGEAVEILTLCGLLELVDHVVGADQVSEPKPAPDTFLRCAELMGIA PARCIVFEDAKAGIQAAKSAGMFVVDVLVDFDIQNDYFLTA
Sequences:
>Translated_201_residues MYTNFDGIIFDMDGTLVDSGQLHEQAWRQTLSHFGIPIDAALMRSLAGVPTIGTLEILITHFGVTPTASYEAMNEYKEAL VRETMHLYVKPTRLIEFAKQNKGKRPMAVGTGAYTGEAVEILTLCGLLELVDHVVGADQVSEPKPAPDTFLRCAELMGIA PARCIVFEDAKAGIQAAKSAGMFVVDVLVDFDIQNDYFLTA >Mature_201_residues MYTNFDGIIFDMDGTLVDSGQLHEQAWRQTLSHFGIPIDAALMRSLAGVPTIGTLEILITHFGVTPTASYEAMNEYKEAL VRETMHLYVKPTRLIEFAKQNKGKRPMAVGTGAYTGEAVEILTLCGLLELVDHVVGADQVSEPKPAPDTFLRCAELMGIA PARCIVFEDAKAGIQAAKSAGMFVVDVLVDFDIQNDYFLTA
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates fructose 1-phosphate and 6-phosphogluconate [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1789046, Length=189, Percent_Identity=44.4444444444444, Blast_Score=155, Evalue=2e-39, Organism=Escherichia coli, GI1787576, Length=195, Percent_Identity=31.2820512820513, Blast_Score=90, Evalue=1e-19, Organism=Drosophila melanogaster, GI116008157, Length=189, Percent_Identity=33.8624338624339, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17137324, Length=189, Percent_Identity=32.2751322751323, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010976 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 21944; Mature: 21944
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTNFDGIIFDMDGTLVDSGQLHEQAWRQTLSHFGIPIDAALMRSLAGVPTIGTLEILIT CCCCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH HFGVTPTASYEAMNEYKEALVRETMHLYVKPTRLIEFAKQNKGKRPMAVGTGAYTGEAVE HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHH ILTLCGLLELVDHVVGADQVSEPKPAPDTFLRCAELMGIAPARCIVFEDAKAGIQAAKSA HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHC GMFVVDVLVDFDIQNDYFLTA CEEEEEEEEEECCCCCEEEEC >Mature Secondary Structure MYTNFDGIIFDMDGTLVDSGQLHEQAWRQTLSHFGIPIDAALMRSLAGVPTIGTLEILIT CCCCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH HFGVTPTASYEAMNEYKEALVRETMHLYVKPTRLIEFAKQNKGKRPMAVGTGAYTGEAVE HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHH ILTLCGLLELVDHVVGADQVSEPKPAPDTFLRCAELMGIAPARCIVFEDAKAGIQAAKSA HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHC GMFVVDVLVDFDIQNDYFLTA CEEEEEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]