Click here to switch to the map view.

The map label for this gene is araA [H]

Identifier: 120598761

GI number: 120598761

Start: 2251273

End: 2252790

Strand: Direct

Name: araA [H]

Synonym: Sputw3181_1946

Alternate gene names: 120598761

Gene position: 2251273-2252790 (Clockwise)

Preceding gene: 120598760

Following gene: 120598762

Centisome position: 47.81

GC content: 46.9

Gene sequence:

>1518_bases
ATGAGAGAGAGCGATATGAAAGCATTCAAACAAAAACAAGTGTGGTTTGTCACGGGTTCGCAGGATTTGTACGGGCCCAA
AGTGTTAGAGCAAGTCGCAAAAAACAGTGAACAAATTGTCAACGGATTTAATCAGTCTGATGCAATTTCAATGGAAGTTG
TCTATAAACCCACGGTTAAATCTCCCCGCGAAATTTACGCGGTGTGCCAAGCTGCTAACAGCGACGAAAACTGTGTCGGG
ATTATCCTGTGGATGCACACTTTCTCGCCAGCCAAAATGTGGATTGCGGGACTGAATGAACTCAGCAAACCCTTTATGCA
TTTGCATACTCAATTTAATGCCGAACTGCCGTGGGCCGACATTAATATGAACTACATGAACACCCATCAAAGTGCCCACG
GTTGCCGCGAGTTTGGTTATATCGGCACCCGGATGCGTAAAGAACGCAAAGTGGTTGTAGGGCATTGGCAAACAAACGAT
GTACAAGCCCAAGTGGATGATTGGTGCCGCGCGGCAGCAGGCTGGAACGAAAGTCAAAATCTTCGTATTGCTCGCTTTGG
TGACAATATGCGCCAAGTGGCTGTGACCGAAGGTGATAAAGTTGCGGCACAAATTCAATTCGGTTACGAAGTGCATGCCT
ACAGTTTAGGCGAACTCAATGATGCCATTAATGCCATTAGCGAAAATGATATCACGGCTCAAATCGACCGCTATGCGAGC
GAATATATTATTAGCAACGAATTGTTTAATGATGAATACCAACTCGATCGTTTAAGAAAAGAAGCCAAAATCGAACTCGG
GTTAGCGCAGTTCTTAAAGGATGGCGAGTTTGGTGCTTTTACGAACTGCTTTGAAAACTTAACGGGAATGACGGGATTAC
CAGGGTTAGCGACACAGCGTTTGATGGCCAATGGTATTGGCTATGGCGGCGAAGGTGATTGGAAAACTGCCGCGATGGTA
CGCATCATGAAAGTGATGGGACAAGGCCGTGTTGGAGGTACTTCCTTTATGGAGGATTACACCTATAACTTCGGTGCGAC
GGATCAAGTGCTCGGCGCACATATGCTCGAAGTGTGTCCGTCTATTGCTGCTAGCAAACCACGTTTAGAAGTGCATCGCC
ACACTATAGGTGTGCGCTGTGATGTGCCACGCTTACTGTTTACGGCGAAAGCGGGGCCTGCCATCAACGTATCGACAATC
GATCTTGGTAATCGTTTCCGTATTATCCTCAACGAATTAGACACAGTGACACCGCCACAGGATTTACCAAACTTACCTGT
TGCTTCTGCACTTTGGGAACCGCGTCCAAATTTGTCAATTGCAGCAGCGGCGTGGATCCATGCGGGCGGCGCGCATCACT
CGGCCTACAGCCAAGCGATATCGACTGAAAACATTGTCGATTTTGCTGAAATGGCGGGGGCTGAATTAGTGATTATTGAT
GCCGACACTCAAATTCGTCAGTTCAAAAATGAATTACGTCAAAATTCCGTTTATTACGGCCTAGCAAGAGGGCTATAA

Upstream 100 bases:

>100_bases
ACAAGAGCTTATAGATAAGCACTATCTGCGTAAGCACGGCAAAGATGCTTACTATGGTCAAGACAAATAAGTTTCCTGTT
CTGAATAACTGAATTTAAAG

Downstream 100 bases:

>100_bases
TTTACCTTCTTAAGTTAAGAGCCGCCCTAGGGCGGCTTTGTATTTTATGTCCGAAGCTGAGTTCTTTATTTGCTAATGGT
TCCCCGTCCAAGAGGTTGAA

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MRESDMKAFKQKQVWFVTGSQDLYGPKVLEQVAKNSEQIVNGFNQSDAISMEVVYKPTVKSPREIYAVCQAANSDENCVG
IILWMHTFSPAKMWIAGLNELSKPFMHLHTQFNAELPWADINMNYMNTHQSAHGCREFGYIGTRMRKERKVVVGHWQTND
VQAQVDDWCRAAAGWNESQNLRIARFGDNMRQVAVTEGDKVAAQIQFGYEVHAYSLGELNDAINAISENDITAQIDRYAS
EYIISNELFNDEYQLDRLRKEAKIELGLAQFLKDGEFGAFTNCFENLTGMTGLPGLATQRLMANGIGYGGEGDWKTAAMV
RIMKVMGQGRVGGTSFMEDYTYNFGATDQVLGAHMLEVCPSIAASKPRLEVHRHTIGVRCDVPRLLFTAKAGPAINVSTI
DLGNRFRIILNELDTVTPPQDLPNLPVASALWEPRPNLSIAAAAWIHAGGAHHSAYSQAISTENIVDFAEMAGAELVIID
ADTQIRQFKNELRQNSVYYGLARGL

Sequences:

>Translated_505_residues
MRESDMKAFKQKQVWFVTGSQDLYGPKVLEQVAKNSEQIVNGFNQSDAISMEVVYKPTVKSPREIYAVCQAANSDENCVG
IILWMHTFSPAKMWIAGLNELSKPFMHLHTQFNAELPWADINMNYMNTHQSAHGCREFGYIGTRMRKERKVVVGHWQTND
VQAQVDDWCRAAAGWNESQNLRIARFGDNMRQVAVTEGDKVAAQIQFGYEVHAYSLGELNDAINAISENDITAQIDRYAS
EYIISNELFNDEYQLDRLRKEAKIELGLAQFLKDGEFGAFTNCFENLTGMTGLPGLATQRLMANGIGYGGEGDWKTAAMV
RIMKVMGQGRVGGTSFMEDYTYNFGATDQVLGAHMLEVCPSIAASKPRLEVHRHTIGVRCDVPRLLFTAKAGPAINVSTI
DLGNRFRIILNELDTVTPPQDLPNLPVASALWEPRPNLSIAAAAWIHAGGAHHSAYSQAISTENIVDFAEMAGAELVIID
ADTQIRQFKNELRQNSVYYGLARGL
>Mature_505_residues
MRESDMKAFKQKQVWFVTGSQDLYGPKVLEQVAKNSEQIVNGFNQSDAISMEVVYKPTVKSPREIYAVCQAANSDENCVG
IILWMHTFSPAKMWIAGLNELSKPFMHLHTQFNAELPWADINMNYMNTHQSAHGCREFGYIGTRMRKERKVVVGHWQTND
VQAQVDDWCRAAAGWNESQNLRIARFGDNMRQVAVTEGDKVAAQIQFGYEVHAYSLGELNDAINAISENDITAQIDRYAS
EYIISNELFNDEYQLDRLRKEAKIELGLAQFLKDGEFGAFTNCFENLTGMTGLPGLATQRLMANGIGYGGEGDWKTAAMV
RIMKVMGQGRVGGTSFMEDYTYNFGATDQVLGAHMLEVCPSIAASKPRLEVHRHTIGVRCDVPRLLFTAKAGPAINVSTI
DLGNRFRIILNELDTVTPPQDLPNLPVASALWEPRPNLSIAAAAWIHAGGAHHSAYSQAISTENIVDFAEMAGAELVIID
ADTQIRQFKNELRQNSVYYGLARGL

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose [H]

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1786248, Length=500, Percent_Identity=51.2, Blast_Score=547, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- ProDom:   PD018364 [H]

Pfam domain/function: PF02610 Arabinose_Isome [H]

EC number: =5.3.1.4 [H]

Molecular weight: Translated: 56259; Mature: 56259

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRESDMKAFKQKQVWFVTGSQDLYGPKVLEQVAKNSEQIVNGFNQSDAISMEVVYKPTVK
CCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCCC
SPREIYAVCQAANSDENCVGIILWMHTFSPAKMWIAGLNELSKPFMHLHTQFNAELPWAD
CHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
INMNYMNTHQSAHGCREFGYIGTRMRKERKVVVGHWQTNDVQAQVDDWCRAAAGWNESQN
CCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
LRIARFGDNMRQVAVTEGDKVAAQIQFGYEVHAYSLGELNDAINAISENDITAQIDRYAS
EEEEEECCCCEEEEEECCCEEEEEEEECEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHH
EYIISNELFNDEYQLDRLRKEAKIELGLAQFLKDGEFGAFTNCFENLTGMTGLPGLATQR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHH
LMANGIGYGGEGDWKTAAMVRIMKVMGQGRVGGTSFMEDYTYNFGATDQVLGAHMLEVCP
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
SIAASKPRLEVHRHTIGVRCDVPRLLFTAKAGPAINVSTIDLGNRFRIILNELDTVTPPQ
HHHCCCCCEEEEHEEEEEEECCCHHEEEECCCCEEEEEEEECCCCEEEEEHHHCCCCCCC
DLPNLPVASALWEPRPNLSIAAAAWIHAGGAHHSAYSQAISTENIVDFAEMAGAELVIID
CCCCCCCHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCEEEEEE
ADTQIRQFKNELRQNSVYYGLARGL
CCHHHHHHHHHHHHCCEEEEHHCCC
>Mature Secondary Structure
MRESDMKAFKQKQVWFVTGSQDLYGPKVLEQVAKNSEQIVNGFNQSDAISMEVVYKPTVK
CCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCCC
SPREIYAVCQAANSDENCVGIILWMHTFSPAKMWIAGLNELSKPFMHLHTQFNAELPWAD
CHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
INMNYMNTHQSAHGCREFGYIGTRMRKERKVVVGHWQTNDVQAQVDDWCRAAAGWNESQN
CCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
LRIARFGDNMRQVAVTEGDKVAAQIQFGYEVHAYSLGELNDAINAISENDITAQIDRYAS
EEEEEECCCCEEEEEECCCEEEEEEEECEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHH
EYIISNELFNDEYQLDRLRKEAKIELGLAQFLKDGEFGAFTNCFENLTGMTGLPGLATQR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHH
LMANGIGYGGEGDWKTAAMVRIMKVMGQGRVGGTSFMEDYTYNFGATDQVLGAHMLEVCP
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
SIAASKPRLEVHRHTIGVRCDVPRLLFTAKAGPAINVSTIDLGNRFRIILNELDTVTPPQ
HHHCCCCCEEEEHEEEEEEECCCHHEEEECCCCEEEEEEEECCCCEEEEEHHHCCCCCCC
DLPNLPVASALWEPRPNLSIAAAAWIHAGGAHHSAYSQAISTENIVDFAEMAGAELVIID
CCCCCCCHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCEEEEEE
ADTQIRQFKNELRQNSVYYGLARGL
CCHHHHHHHHHHHHCCEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA