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The map label for this gene is araD

Identifier: 120598760

GI number: 120598760

Start: 2250547

End: 2251242

Strand: Direct

Name: araD

Synonym: Sputw3181_1945

Alternate gene names: 120598760

Gene position: 2250547-2251242 (Clockwise)

Preceding gene: 120598759

Following gene: 120598761

Centisome position: 47.8

GC content: 45.11

Gene sequence:

>696_bases
ATGTCATTTATAGAACTTAAACGCGAAGTTTATGAAGCCAATATGGAGCTCGAAAAGCGTCATTTAGTGACCTATACCTT
TGGCAATGTGTCACAAATTGATCGCAAGCGTGGTGTCATCGGTATTAAGCCCAGCGGCGTACCCTACGAAGATCTTAAGG
TTGAAGATATCGTTATTGTCGATCTTGAAAACCACATCGTCGAGGGACGTTTACGTCCATCATCTGACACTAAAACCCAC
ACTTACTTGTATCGCCAGTGGGAAAGTATTGGGGGCATTACCCATACGCATTCCACCTATGCCACCGCATGGGCACAGGC
GCAAATTGCAATCCCTTGTTTGGGTACCACTCAAGCCGATTATGTTTACGGCGAGATCCCCTGTACAGCTGTGATGCGTG
ATGACCAAATTAGTCGCGACTACGAAGAAGAAACTGGTGTACAGATTCTCGATTGTTTTGCTGATAGAAACCCGAGTGAG
TCACCTATGGTCATTGTGGCAGGGCATGCACCATTTACGTGGGGAGACAGTGCCGCCAAATCTGTTTACCACGCCGTTCT
GCTTGAAGAAATTGCCAGAATGGCATACCTCACTAAGACATTGTCACCGAATATAACATCATTAAAACAAGAGCTTATAG
ATAAGCACTATCTGCGTAAGCACGGCAAAGATGCTTACTATGGTCAAGACAAATAA

Upstream 100 bases:

>100_bases
GCTAAAACCTATCAGTCTAATCCCATCAATGCAGAAAAATACCAAATGCTTTATCAAGCGTATCTAGCCCTAGGCCATTA
TGTTGATGGAGCGAAATAAT

Downstream 100 bases:

>100_bases
GTTTCCTGTTCTGAATAACTGAATTTAAAGATGAGAGAGAGCGATATGAAAGCATTCAAACAAAAACAAGTGTGGTTTGT
CACGGGTTCGCAGGATTTGT

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSFIELKREVYEANMELEKRHLVTYTFGNVSQIDRKRGVIGIKPSGVPYEDLKVEDIVIVDLENHIVEGRLRPSSDTKTH
TYLYRQWESIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRDDQISRDYEEETGVQILDCFADRNPSE
SPMVIVAGHAPFTWGDSAAKSVYHAVLLEEIARMAYLTKTLSPNITSLKQELIDKHYLRKHGKDAYYGQDK

Sequences:

>Translated_231_residues
MSFIELKREVYEANMELEKRHLVTYTFGNVSQIDRKRGVIGIKPSGVPYEDLKVEDIVIVDLENHIVEGRLRPSSDTKTH
TYLYRQWESIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRDDQISRDYEEETGVQILDCFADRNPSE
SPMVIVAGHAPFTWGDSAAKSVYHAVLLEEIARMAYLTKTLSPNITSLKQELIDKHYLRKHGKDAYYGQDK
>Mature_230_residues
SFIELKREVYEANMELEKRHLVTYTFGNVSQIDRKRGVIGIKPSGVPYEDLKVEDIVIVDLENHIVEGRLRPSSDTKTHT
YLYRQWESIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRDDQISRDYEEETGVQILDCFADRNPSES
PMVIVAGHAPFTWGDSAAKSVYHAVLLEEIARMAYLTKTLSPNITSLKQELIDKHYLRKHGKDAYYGQDK

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=225, Percent_Identity=51.1111111111111, Blast_Score=263, Evalue=7e-72,
Organism=Escherichia coli, GI1786247, Length=228, Percent_Identity=51.7543859649123, Blast_Score=241, Evalue=2e-65,
Organism=Escherichia coli, GI1790008, Length=228, Percent_Identity=49.1228070175439, Blast_Score=237, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26217; Mature: 26086

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIELKREVYEANMELEKRHLVTYTFGNVSQIDRKRGVIGIKPSGVPYEDLKVEDIVIV
CCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCEEEECCCCCCHHCCEECEEEEE
DLENHIVEGRLRPSSDTKTHTYLYRQWESIGGITHTHSTYATAWAQAQIAIPCLGTTQAD
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEECCCHHHHHEEEEEEEEEECCCCCCC
YVYGEIPCTAVMRDDQISRDYEEETGVQILDCFADRNPSESPMVIVAGHAPFTWGDSAAK
EEEECCCEEEEECCCCCCCCHHHHCCCEEEEHHHCCCCCCCCEEEEECCCCCCCCCHHHH
SVYHAVLLEEIARMAYLTKTLSPNITSLKQELIDKHYLRKHGKDAYYGQDK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SFIELKREVYEANMELEKRHLVTYTFGNVSQIDRKRGVIGIKPSGVPYEDLKVEDIVIV
CHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCEEEECCCCCCHHCCEECEEEEE
DLENHIVEGRLRPSSDTKTHTYLYRQWESIGGITHTHSTYATAWAQAQIAIPCLGTTQAD
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEECCCHHHHHEEEEEEEEEECCCCCCC
YVYGEIPCTAVMRDDQISRDYEEETGVQILDCFADRNPSESPMVIVAGHAPFTWGDSAAK
EEEECCCEEEEECCCCCCCCHHHHCCCEEEEHHHCCCCCCCCEEEEECCCCCCCCCHHHH
SVYHAVLLEEIARMAYLTKTLSPNITSLKQELIDKHYLRKHGKDAYYGQDK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA