Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120598751

Identifier: 120598751

GI number: 120598751

Start: 2237963

End: 2238445

Strand: Direct

Name: 120598751

Synonym: Sputw3181_1936

Alternate gene names: NA

Gene position: 2237963-2238445 (Clockwise)

Preceding gene: 120598750

Following gene: 120598757

Centisome position: 47.53

GC content: 46.17

Gene sequence:

>483_bases
ATGCAGCTTAACACTGTCTTTAACGCTAAGGTCACCATCAGCCTTATCACTTGTCTATTATGTGGATTAGTGGTGAGTTT
TTCAGCGCATAGTACTCCACAGTTTGACGAGCAGCGTGCTAAAAATGCCGGTGCCGATGAATACGGTATGAAGCACTATG
TCATGGCCTTTTTAAAGCGGGGCCCTAATCGGGATAGAACACAGGCACAGGCCGAGCAATTACAACGGGCGCATTTGAAC
AATATCACTCGCCTTGCCAATGAGGGTAAATTAGTGCTGGCAGGGCCCTTTTTACACGATGGCGAATTACGCGGCATTTA
TATTTTTGACGTTACTACGGTTGAAGAGGCAAAAGCCTTAACGGAAACCGATCCTGCAATTCAAGCGGGTAGCCTAGTAT
TGGAGTTATTACCTTGGTATGGCAGCGCCGCACTGACAGAGGTGAATGAACTGCATAGGGTGATGGCGAAAAAAGATATT
TAA

Upstream 100 bases:

>100_bases
TTTATTGTATTTTCAACATTGTTGCCGCAAATACGCTAAGGTTTAAATGTTTAAATTAAGCAACATAACTCACCCATAAC
TCATGCAGAGGGAATTCGCT

Downstream 100 bases:

>100_bases
CAGCCAAGTCGCTAGACTCAATTAGCAGAGGTTATTCTTCGCACACTTCGGCGATTTTTGGCGAGATCTGCGGCTTTGCA
CTATGGGATATGGTGCTCTG

Product: YCII-like protein

Products: NA

Alternate protein names: YCII-Related Protein; Ycii-Related Protein; YCII-Related; YCII Domain-Containing Protein

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN
NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI

Sequences:

>Translated_160_residues
MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN
NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI
>Mature_160_residues
MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN
NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17712; Mature: 17712

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKR
CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC
GPNRDRTQAQAEQLQRAHLNNITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKAL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCHHHHHHH
TETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI
HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKR
CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC
GPNRDRTQAQAEQLQRAHLNNITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKAL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCHHHHHHH
TETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI
HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA