| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598751
Identifier: 120598751
GI number: 120598751
Start: 2237963
End: 2238445
Strand: Direct
Name: 120598751
Synonym: Sputw3181_1936
Alternate gene names: NA
Gene position: 2237963-2238445 (Clockwise)
Preceding gene: 120598750
Following gene: 120598757
Centisome position: 47.53
GC content: 46.17
Gene sequence:
>483_bases ATGCAGCTTAACACTGTCTTTAACGCTAAGGTCACCATCAGCCTTATCACTTGTCTATTATGTGGATTAGTGGTGAGTTT TTCAGCGCATAGTACTCCACAGTTTGACGAGCAGCGTGCTAAAAATGCCGGTGCCGATGAATACGGTATGAAGCACTATG TCATGGCCTTTTTAAAGCGGGGCCCTAATCGGGATAGAACACAGGCACAGGCCGAGCAATTACAACGGGCGCATTTGAAC AATATCACTCGCCTTGCCAATGAGGGTAAATTAGTGCTGGCAGGGCCCTTTTTACACGATGGCGAATTACGCGGCATTTA TATTTTTGACGTTACTACGGTTGAAGAGGCAAAAGCCTTAACGGAAACCGATCCTGCAATTCAAGCGGGTAGCCTAGTAT TGGAGTTATTACCTTGGTATGGCAGCGCCGCACTGACAGAGGTGAATGAACTGCATAGGGTGATGGCGAAAAAAGATATT TAA
Upstream 100 bases:
>100_bases TTTATTGTATTTTCAACATTGTTGCCGCAAATACGCTAAGGTTTAAATGTTTAAATTAAGCAACATAACTCACCCATAAC TCATGCAGAGGGAATTCGCT
Downstream 100 bases:
>100_bases CAGCCAAGTCGCTAGACTCAATTAGCAGAGGTTATTCTTCGCACACTTCGGCGATTTTTGGCGAGATCTGCGGCTTTGCA CTATGGGATATGGTGCTCTG
Product: YCII-like protein
Products: NA
Alternate protein names: YCII-Related Protein; Ycii-Related Protein; YCII-Related; YCII Domain-Containing Protein
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI
Sequences:
>Translated_160_residues MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI >Mature_160_residues MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKRGPNRDRTQAQAEQLQRAHLN NITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKALTETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17712; Mature: 17712
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKR CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC GPNRDRTQAQAEQLQRAHLNNITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKAL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCHHHHHHH TETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQLNTVFNAKVTISLITCLLCGLVVSFSAHSTPQFDEQRAKNAGADEYGMKHYVMAFLKR CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC GPNRDRTQAQAEQLQRAHLNNITRLANEGKLVLAGPFLHDGELRGIYIFDVTTVEEAKAL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEECCHHHHHHH TETDPAIQAGSLVLELLPWYGSAALTEVNELHRVMAKKDI HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA