| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is gyrA [H]
Identifier: 120598757
GI number: 120598757
Start: 2244586
End: 2247339
Strand: Direct
Name: gyrA [H]
Synonym: Sputw3181_1942
Alternate gene names: 120598757
Gene position: 2244586-2247339 (Clockwise)
Preceding gene: 120598751
Following gene: 120598758
Centisome position: 47.67
GC content: 47.2
Gene sequence:
>2754_bases ATGACTGATCTGGCATCATCTATTTCGCCAATTAATATCGAAGACGAACTAAAGAATTCGTACCTTGATTACGCCATGAG CGTTATCGTGGGACGTGCATTACCAGACGTGCGCGACGGCTTAAAGCCGGTTCATCGCCGCGTTCTGTTTGCCATGAGTG AATTGAAGAACGATTGGAACAAGCCTTACAAAAAATCTGCCCGTGTGGTTGGTGACGTCATCGGTAAATATCACCCCCAT GGTGATTCTGCTGTTTATGACACTATCGTCCGTATGGCCCAGCCATTCTCACTGCGTTATACCTTAGTAGACGGCCAAGG TAACTTCGGTTCGGTCGACGGTGACTCAGCGGCGGCAATGCGTTATACCGAAATCCGTATGGATAAGTTAGCGCACCAAT TACTGGCCGATCTTGAAAAAGAGACAGTGGATTTCGTCCCTAACTACGACGGCACCGAACAAATTCCAGCCGTATTACCT ACACGCGTACCTAACCTGTTAATTAACGGTTCATCAGGTATTGCGGTCGGTATGGCAACCAACATCCCACCCCACAACCT AACCGAAGTGGTCAAGGGCTGTTTGGCATTGATTGAAGAACCTTCACTGTCGATTGAACAATTGATGGAATATATCCCAG GTCCAGATTTTCCCACTGCGGCGATTATCAATGGCCGTAAAGGAATTATTGATGCCTATAAAACGGGCCGTGGCCGCGCG ATCATGCGTGCTCTGGCGGATATTGAAACAGAAGATAATGGCCGCGAGCGCATTATCGTCACTGAAATTCCTTATCAAGT GAACAAAGCCCGGTTAATCGAGAAGATTGCCGAGCTGGTGAAAGATAAAAAGCTTGAAGGGATAAGCGGTCTACGCGACG AGTCTGACAAAGACGGTATGCGTATTGTTATCGAAATTAAGCGCGGTGAAGTGGGCGAGGTCGTATTAAACAACCTGTAT GCTCAAACGCAAATGCAATGCTCTTTCGGGATTAACATGGTGGCCCTGACCAATGGTCAGCCTAAACTGTTTAACCTTAA AGAAATGCTTGAATGCTTTATTTTGCATCGCCGTGAAGTAGTGACGCGTCGTACCGTTTTTGAATTACGTAAAGCCCGTG AGCGCGCCCATATTTTGGAAGCCTTAGCGGTAGCGCTCGCCAATATCGACCCAATTATTGCGCTGATCAAAGCCTCGCCA ACGCCTGCTGATGCCAAAGTGAAATTGGTTGAGCAAGGTTGGGAATTAGGCCATGTTCAAGGCATGCTGGAAAAAGCGGG CGATGACGCTGCGCGTCCTGAGTGGTTAGAGCCACAATACGGTATTCGTGATGGTCAATACTTCCTGACTGAGCAACAAG CTCAGGCGATTCTGGAACTGCGTTTACACCGGTTGACCGGTCTTGAACACGATAAGATTATCGCTGAATACGAAGAACTA CTCGAATTTATCGCGGGTCTGCTGTTTATTTTGCGCAGTCCTGAGCGTTTGATGGAAGTGATCAAAGAAGAGCTTGAGGA AATCCTAACGGAATATGGTGATGCTCGTCGTACAGTGATCAATGCCAACGAAATTGATATGAGTCTTGAAGATCTTATCA ATGAAGAAGACGTTGTAGTGACCTTGTCTCACTTAGGTTATGCCAAATATCAACCATTGAGCGATTATCAAGCCCAGCGC CGTGGTGGTAAAGGTAAAGCTGCAACCAAAGTGAAAGACGAAGATTTCGTTGAAAAACTGCTGGTTGCCAATACCCATGA CACCATTTTGTGCTTCTCTGACTTCGGTAAGATGTATTGGCTTAAAGTGTATCAATTGCCATTAGCGAGCCGTACGGCCC GCGGTCGTCCAATTGTTAACTTGTTGCCGTTATCCGATGGCGAGCGCATCACTGCGATTCTGCCAGTACGTGAATACGCG GCTGACAAGTACATCATCATGGCGACGTCAAACGGTACTGTGAAGAAAACCGCACTGACTGCTTATAGCAACCCACGTGC AAACGGCATTATCGCCGTTAATCTCAAAGACGGTGACCAACTGATCGGTGTCGATATCACTAACGGTGATGACGAAATCA TGTTGTTCTCAAACGAAGGTAAAGTGGTTCGTTTTGGTGAGAAAGTTCGTGATTCTGAAACAGGCGAAGTGAAAACCGAT CCTGAAACCGGTGAAGAAGTGTTGTCACTGCGTCCTATGGGCCGCACTGCAACAGGCGTTCGTGGTATCCGTTTAGAAGA AGGCCAGAAAGTCGTGTCGCTTATCGTACCGAAAGGCGATGGTGCGATTTTGACTGTGACTGAAAACGGTTACGGTAAAC GGACTCAACTGTCTGAATATCCAGCGAAGAGCCGTGCGACTAAAGGTGTGGTATCAATCAAGGTGAGTGAGCGTAATGGC GCGGTCGTTGGCGCAGTACAAGTCGGCTCTAATGATGAAATCATGCTGATCAGTGATAAAGGAACATTAGTCCGTACTCC GGCTAAGGGGGTTTCTATTATCGGTCGTAATACCCAAGGCGTGACTATTATTCGTACCGCAAGTGACGAGAAAGTGGTTG GTCTACAGCGTATTGATGAAATCCAAACCGATGAAGATGATGAAGTCGAACTGGATGAAAATGGTTTGCCGATCGTTCCT GCGATCATTGAAGGTGAATTAGCCAATAATGAACCTCTTGACGATGATATCGACGAGGATGAACTGGACGACGATGAAGA CGACGAACTTGCCGATGAGCAAGACGAAGACTAA
Upstream 100 bases:
>100_bases GACATTAAATAACTGTGTTAGAATGCCAAATCACGTTTTTGGGCTAGGCAATGATACGGATTATACGTTGTCGGCTATTT TTCAGGGGAACGAGCAGTTT
Downstream 100 bases:
>100_bases TTAAGTGCCTTTAAATCGAGCGTCCAATTGGACGCTCGTTTTTTAAGGGCACAGTCATGTTATGAATACAAAAATCATGG TTGGAAATAAGGAGAGTGTC
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 917; Mature: 916
Protein sequence:
>917_residues MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPH GDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLP TRVPNLLINGSSGIAVGMATNIPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLY AQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASP TPADAKVKLVEQGWELGHVQGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEEL LEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLGYAKYQPLSDYQAQR RGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYA ADKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTD PETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNG AVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQTDEDDEVELDENGLPIVP AIIEGELANNEPLDDDIDEDELDDDEDDELADEQDED
Sequences:
>Translated_917_residues MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPH GDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLP TRVPNLLINGSSGIAVGMATNIPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLY AQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASP TPADAKVKLVEQGWELGHVQGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEEL LEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLGYAKYQPLSDYQAQR RGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYA ADKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTD PETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNG AVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQTDEDDEVELDENGLPIVP AIIEGELANNEPLDDDIDEDELDDDEDDELADEQDED >Mature_916_residues TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPHG DSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPT RVPNLLINGSSGIAVGMATNIPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAI MRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLYA QTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPT PADAKVKLVEQGWELGHVQGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELL EFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLGYAKYQPLSDYQAQRR GGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAA DKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDP ETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGA VVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQTDEDDEVELDENGLPIVPA IIEGELANNEPLDDDIDEDELDDDEDDELADEQDED
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=179, Percent_Identity=33.5195530726257, Blast_Score=77, Evalue=9e-14, Organism=Homo sapiens, GI19913408, Length=175, Percent_Identity=32.5714285714286, Blast_Score=75, Evalue=3e-13, Organism=Escherichia coli, GI1788562, Length=867, Percent_Identity=71.8569780853518, Blast_Score=1276, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=664, Percent_Identity=39.0060240963855, Blast_Score=413, Evalue=1e-116, Organism=Caenorhabditis elegans, GI17535065, Length=286, Percent_Identity=27.972027972028, Blast_Score=76, Evalue=7e-14, Organism=Caenorhabditis elegans, GI212645657, Length=285, Percent_Identity=27.719298245614, Blast_Score=74, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=355, Percent_Identity=26.4788732394366, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI17136538, Length=180, Percent_Identity=32.2222222222222, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 101522; Mature: 101391
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00189 LIPOYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHH RYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEECCCCEEEEEEC NIPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCCCCHH IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV EEEEEECCCCHHHHHHHHHHHHHEEEHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHH VTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHH GMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEEL HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCHHHHCCCCCEEE TLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW EHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEE LKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSNGTVKKTALT EHEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHHCCCCEEEEEECCCCEEEEEEE AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTD ECCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEECCCCCEEEECHHHCCCCCCCEECC PETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEY CCCCHHHHEECCCCCCCCCCCCEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHC PAKSRATKGVVSIKVSERNGAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQG CCHHHCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCEEEEECCCCC VTIIRTASDEKVVGLQRIDEIQTDEDDEVELDENGLPIVPAIIEGELANNEPLDDDIDED EEEEEECCCCCEECHHHHHHHCCCCCCCEEECCCCCCEEEHEEECCCCCCCCCCCCCCCC ELDDDEDDELADEQDED CCCCCCCHHHCCCCCCC >Mature Secondary Structure TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHH RYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEECCCCEEEEEEC NIPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCCCCHH IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV EEEEEECCCCHHHHHHHHHHHHHEEEHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHH VTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHH GMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEEL HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCHHHHCCCCCEEE TLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW EHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEE LKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSNGTVKKTALT EHEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHHCCCCEEEEEECCCCEEEEEEE AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTD ECCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEECCCCCEEEECHHHCCCCCCCEECC PETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEY CCCCHHHHEECCCCCCCCCCCCEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHC PAKSRATKGVVSIKVSERNGAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQG CCHHHCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCEEEEECCCCC VTIIRTASDEKVVGLQRIDEIQTDEDDEVELDENGLPIVPAIIEGELANNEPLDDDIDED EEEEEECCCCCEECHHHHHHHCCCCCCCEEECCCCCCEEEHEEECCCCCCCCCCCCCCCC ELDDDEDDELADEQDED CCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7642123 [H]