| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598629
Identifier: 120598629
GI number: 120598629
Start: 2087471
End: 2089786
Strand: Direct
Name: 120598629
Synonym: Sputw3181_1813
Alternate gene names: NA
Gene position: 2087471-2089786 (Clockwise)
Preceding gene: 120598628
Following gene: 120598630
Centisome position: 44.34
GC content: 44.34
Gene sequence:
>2316_bases ATGTTAGAAAAACTGGTCAACGGATTTGAATCATTTTTATTTCGCAATCGCGCATGGGTAGTTGGTATTTTTGCGTTATT GACACTGTTTTTGGGATATCAAGCTAGTCAGTTGAAAATGGATGCGGCGTTTATCAAAAATATTCCGCTAAACCACAGTT ATATGCAGACTTACCTCAAACATCAAAAGGATTTTGGGGGAGCGAATAGCATTATGGTGGCCGTTGAAGATACAAGCGGC AATATTTTTAATGCAAATTACTTTGATACGTTAAAAAACGTCCATGACCAACTCTTCTTTATCCCCGGGGTCGAACGTTC GCAGGTGAAATCTATTTTTTCTCCTTCAACGCGTTTTACGGAAGTGGTAGAAGATGGCTTTGCAGGGGGGCCTGTGATCC CCGCTGATTTTTCAACGACTCAAACAGGGTTGGATACGGTTCGCGATAATATTGAAAAAGCAGGGATTGTTGGGCGCTTA ATCGCAAATGATTACAGTGCTGCTATGGTGTCCGCCCAATTAATGGATTTTGATCCACAAACAGGTAAACCACTGGATAC TATCGCTTTTGCGGCTCAACTTGAAAATGAACTCCGAGGGAAATTCGAAACCGATAAGGTTAAAATTCACATTATTGGTT TTGCCAAAATGGCGGGTGATGTTGCCGACGGTGCCAAGGGCGTGTTGCTGTTTTTTGTGATCGCGATTTTGATCACGGCC GTGATGGTTTATCTTTTTTCTAAGTCCCTGATCCTCACTATTTTGCCTTTGGCTTGCAGCTTGACAGCGGTGGTATGGCA ACTTGGACTATTAACGGTGATCGGTTTTGGTCTCGATCCCATGTCGATTTTAGTGCCATTCCTCGTATTTGCGATTGGGG TGAGCCACGGTGTGCAAATGATCAATGCGGTTAGGCGCCGAGTGATGGATGGGCAAACGACAAAAGCGGCGGCGGCATCG GCGTTTCGTAGTTTATTAGTCCCAGGCGGTGTGGCGTTACTCTCTGATACCGTTGGTTTTATTACACTGTTATCTATTGA TATCGGCATTATCCGTGAGTTAGCTATTTCTGCGTCTTTAGGCGTAGGTGTGATTATTTTCACTAACCTTATTTTGCTGC CATTAGTGATTTCTTTCACTGAATTGAAAGCCGTCAAACACGCAGAGCCGACGGCTGAAGAAGTGCGTGCTGAAGCCATT TGGCGTTTTTTAGCAAAGTTTGCGACCCCTAAGTATGCTGTTGTGGTGATTATCGCAACTACAGCATTGTATTTTGTTGG TTTGCAGCAGGCTAATCAGATGAAAATTGGCGATTTGCAGGGTGGGGCTCCCGCCTTACATCAAGACTCACGGTATAACT TAGATACTTTCTTTATTACTGACCATTTTTCTATTACCACAGATGTGATGACTGTGATTGTTGAAGCGACTCCAGAGGCA TGTACTTATCATGATATATTGACGCAAATAGATGAATTTGAATGGTTAGTTCGCAATACTCCTGGGATTGAATCGACAGT GAGTTTAGCTTCAGTTGCAAAAAAAGTGAATGCGGGCTTTAACGAAGGTAATCCAAGATGGGAAGTGCTGCCGCGCACGA CGGCAAGCTTGGTACAAGCGATAGGCCAGATCCCAACAACATCAGGGTTGTTAAATGGTGATTGTTCCGTGATGCCCGTG TATTTGTTTATGAAAGATCATAAGGCCGAAACCATCGAAACCGTTGTGGCAAAGGTGAAGGCGGTCGCGGCGAAAATGGA TAATGAACAATTGCAGTTTAAGCTGGCGTCGGGTCCTGTGGGTGTGATGGCTGCGACCAACGAAGCCGTTGCTGCCGCGC AATTGCCTATGATGCTATACGTCTATGGTGCTGTTTTTGTACTTTGTTTAATTAGCTTTAAATCCTTTAAAGCGACGGTG GCGGTGATTATTCCTTTATATGTTGTTTCAACATTAGCGCAAGCCTTGATGACGCAGCTTAATATTGGGCTCGCGGTCAG TACGTTACCTGTGATTGCTCTTGGTGTGGGAATTGGTGTGGATTATGGGATTTATATCTTATCTACTATGTCGTCTAAGC TGTCTAACGGTATGCCTGTTCAGCAGGCTTACTATGAAGCTTTGGTCGAACGGGGTAGTGCGGTGATTTTCACTGGTTTG ACTTTGGCGATTGGTGTGAGCACTTGGTTTTTCTCGGCGCTTAAGTTCCAAATGGATATGGGAATATTGCTTACCTTCAT GTTTGTGGTAAATATGCTGGGTGCAATAATTATCCTACCCGCGTTAGCCGCGGTATTTTGGCGACAAGCCAAGTAG
Upstream 100 bases:
>100_bases TCGCAAAAGATAATCAAGGGAATATGTGGTTATCCGGCAGCCAAGGGCTGTTTATTCTTAAGCCATAAAATTCTAGAACA ACAATAATAGGGCCGAGAAG
Downstream 100 bases:
>100_bases AGTCTAGCAATGGGGAGTTTAACTCCCCATTTGTATTTGAATAGTTAGTCTGTTTTTACGATTGTTTGGTCATTATTCAT CCTGTATCCCTGCCTTTACT
Product: hypothetical protein
Products: NA
Alternate protein names: RND Superfamily Exporter; Patched Family Protein; Efflux Transporter Hydrophobe/Amphiphile Efflux-3 Family; Exporter Of RND Superfamily; Exporter Of RND Superfamily Protein; Inner Membrane Transporter; Transporter Protein; Polyketide Cyclase/Dehydrase; RND Family Multidrug Efflux Transporter; RND Superfamily Transporter; Mmpl Family; Exporter; Exporters Of RND Superfamily; RND Family Transporter; RND Family Efflux Transporter; Transporter RND Superfamily
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK
Sequences:
>Translated_771_residues MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK >Mature_771_residues MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83419; Mature: 83419
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLK CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH HQKDFGGANSIMVAVEDTSGNIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFT HHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCHHHH EVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRLIANDYSAAMVSAQLMDFDPQ HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC TGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH INAVRRRVMDGQTTKAAAASAFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASL HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAIWRFLAKFATPKYAVVVIIAT CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHH TALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCH CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH IGQIPTTSGLLNGDCSVMPVYLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPV HHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE GVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATVAVIIPLYVVSTLAQALMTQL EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHH TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLK CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH HQKDFGGANSIMVAVEDTSGNIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFT HHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCHHHH EVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRLIANDYSAAMVSAQLMDFDPQ HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC TGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH INAVRRRVMDGQTTKAAAASAFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASL HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAIWRFLAKFATPKYAVVVIIAT CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHH TALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCH CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH IGQIPTTSGLLNGDCSVMPVYLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPV HHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE GVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATVAVIIPLYVVSTLAQALMTQL EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHH TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA