Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120598629

Identifier: 120598629

GI number: 120598629

Start: 2087471

End: 2089786

Strand: Direct

Name: 120598629

Synonym: Sputw3181_1813

Alternate gene names: NA

Gene position: 2087471-2089786 (Clockwise)

Preceding gene: 120598628

Following gene: 120598630

Centisome position: 44.34

GC content: 44.34

Gene sequence:

>2316_bases
ATGTTAGAAAAACTGGTCAACGGATTTGAATCATTTTTATTTCGCAATCGCGCATGGGTAGTTGGTATTTTTGCGTTATT
GACACTGTTTTTGGGATATCAAGCTAGTCAGTTGAAAATGGATGCGGCGTTTATCAAAAATATTCCGCTAAACCACAGTT
ATATGCAGACTTACCTCAAACATCAAAAGGATTTTGGGGGAGCGAATAGCATTATGGTGGCCGTTGAAGATACAAGCGGC
AATATTTTTAATGCAAATTACTTTGATACGTTAAAAAACGTCCATGACCAACTCTTCTTTATCCCCGGGGTCGAACGTTC
GCAGGTGAAATCTATTTTTTCTCCTTCAACGCGTTTTACGGAAGTGGTAGAAGATGGCTTTGCAGGGGGGCCTGTGATCC
CCGCTGATTTTTCAACGACTCAAACAGGGTTGGATACGGTTCGCGATAATATTGAAAAAGCAGGGATTGTTGGGCGCTTA
ATCGCAAATGATTACAGTGCTGCTATGGTGTCCGCCCAATTAATGGATTTTGATCCACAAACAGGTAAACCACTGGATAC
TATCGCTTTTGCGGCTCAACTTGAAAATGAACTCCGAGGGAAATTCGAAACCGATAAGGTTAAAATTCACATTATTGGTT
TTGCCAAAATGGCGGGTGATGTTGCCGACGGTGCCAAGGGCGTGTTGCTGTTTTTTGTGATCGCGATTTTGATCACGGCC
GTGATGGTTTATCTTTTTTCTAAGTCCCTGATCCTCACTATTTTGCCTTTGGCTTGCAGCTTGACAGCGGTGGTATGGCA
ACTTGGACTATTAACGGTGATCGGTTTTGGTCTCGATCCCATGTCGATTTTAGTGCCATTCCTCGTATTTGCGATTGGGG
TGAGCCACGGTGTGCAAATGATCAATGCGGTTAGGCGCCGAGTGATGGATGGGCAAACGACAAAAGCGGCGGCGGCATCG
GCGTTTCGTAGTTTATTAGTCCCAGGCGGTGTGGCGTTACTCTCTGATACCGTTGGTTTTATTACACTGTTATCTATTGA
TATCGGCATTATCCGTGAGTTAGCTATTTCTGCGTCTTTAGGCGTAGGTGTGATTATTTTCACTAACCTTATTTTGCTGC
CATTAGTGATTTCTTTCACTGAATTGAAAGCCGTCAAACACGCAGAGCCGACGGCTGAAGAAGTGCGTGCTGAAGCCATT
TGGCGTTTTTTAGCAAAGTTTGCGACCCCTAAGTATGCTGTTGTGGTGATTATCGCAACTACAGCATTGTATTTTGTTGG
TTTGCAGCAGGCTAATCAGATGAAAATTGGCGATTTGCAGGGTGGGGCTCCCGCCTTACATCAAGACTCACGGTATAACT
TAGATACTTTCTTTATTACTGACCATTTTTCTATTACCACAGATGTGATGACTGTGATTGTTGAAGCGACTCCAGAGGCA
TGTACTTATCATGATATATTGACGCAAATAGATGAATTTGAATGGTTAGTTCGCAATACTCCTGGGATTGAATCGACAGT
GAGTTTAGCTTCAGTTGCAAAAAAAGTGAATGCGGGCTTTAACGAAGGTAATCCAAGATGGGAAGTGCTGCCGCGCACGA
CGGCAAGCTTGGTACAAGCGATAGGCCAGATCCCAACAACATCAGGGTTGTTAAATGGTGATTGTTCCGTGATGCCCGTG
TATTTGTTTATGAAAGATCATAAGGCCGAAACCATCGAAACCGTTGTGGCAAAGGTGAAGGCGGTCGCGGCGAAAATGGA
TAATGAACAATTGCAGTTTAAGCTGGCGTCGGGTCCTGTGGGTGTGATGGCTGCGACCAACGAAGCCGTTGCTGCCGCGC
AATTGCCTATGATGCTATACGTCTATGGTGCTGTTTTTGTACTTTGTTTAATTAGCTTTAAATCCTTTAAAGCGACGGTG
GCGGTGATTATTCCTTTATATGTTGTTTCAACATTAGCGCAAGCCTTGATGACGCAGCTTAATATTGGGCTCGCGGTCAG
TACGTTACCTGTGATTGCTCTTGGTGTGGGAATTGGTGTGGATTATGGGATTTATATCTTATCTACTATGTCGTCTAAGC
TGTCTAACGGTATGCCTGTTCAGCAGGCTTACTATGAAGCTTTGGTCGAACGGGGTAGTGCGGTGATTTTCACTGGTTTG
ACTTTGGCGATTGGTGTGAGCACTTGGTTTTTCTCGGCGCTTAAGTTCCAAATGGATATGGGAATATTGCTTACCTTCAT
GTTTGTGGTAAATATGCTGGGTGCAATAATTATCCTACCCGCGTTAGCCGCGGTATTTTGGCGACAAGCCAAGTAG

Upstream 100 bases:

>100_bases
TCGCAAAAGATAATCAAGGGAATATGTGGTTATCCGGCAGCCAAGGGCTGTTTATTCTTAAGCCATAAAATTCTAGAACA
ACAATAATAGGGCCGAGAAG

Downstream 100 bases:

>100_bases
AGTCTAGCAATGGGGAGTTTAACTCCCCATTTGTATTTGAATAGTTAGTCTGTTTTTACGATTGTTTGGTCATTATTCAT
CCTGTATCCCTGCCTTTACT

Product: hypothetical protein

Products: NA

Alternate protein names: RND Superfamily Exporter; Patched Family Protein; Efflux Transporter Hydrophobe/Amphiphile Efflux-3 Family; Exporter Of RND Superfamily; Exporter Of RND Superfamily Protein; Inner Membrane Transporter; Transporter Protein; Polyketide Cyclase/Dehydrase; RND Family Multidrug Efflux Transporter; RND Superfamily Transporter; Mmpl Family; Exporter; Exporters Of RND Superfamily; RND Family Transporter; RND Family Efflux Transporter; Transporter RND Superfamily

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG
NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL
IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS
AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI
WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA
CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV
YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV
AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK

Sequences:

>Translated_771_residues
MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG
NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL
IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS
AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI
WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA
CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV
YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV
AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK
>Mature_771_residues
MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQKDFGGANSIMVAVEDTSG
NIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFTEVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRL
IANDYSAAMVSAQLMDFDPQTGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQMINAVRRRVMDGQTTKAAAAS
AFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASLGVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAI
WRFLAKFATPKYAVVVIIATTALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA
CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTSGLLNGDCSVMPV
YLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPVGVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATV
AVIIPLYVVSTLAQALMTQLNIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK

Specific function: Unknown

COG id: COG1033

COG function: function code R; Predicted exporters of the RND superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83419; Mature: 83419

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLK
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
HQKDFGGANSIMVAVEDTSGNIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFT
HHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCHHHH
EVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRLIANDYSAAMVSAQLMDFDPQ
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH
VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
INAVRRRVMDGQTTKAAAASAFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASL
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAIWRFLAKFATPKYAVVVIIAT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
TALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA
HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCH
CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH
IGQIPTTSGLLNGDCSVMPVYLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPV
HHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
GVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATVAVIIPLYVVSTLAQALMTQL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHH
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLEKLVNGFESFLFRNRAWVVGIFALLTLFLGYQASQLKMDAAFIKNIPLNHSYMQTYLK
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
HQKDFGGANSIMVAVEDTSGNIFNANYFDTLKNVHDQLFFIPGVERSQVKSIFSPSTRFT
HHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHHCEEECCCCCHHHHHHHHCCCHHHH
EVVEDGFAGGPVIPADFSTTQTGLDTVRDNIEKAGIVGRLIANDYSAAMVSAQLMDFDPQ
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TGKPLDTIAFAAQLENELRGKFETDKVKIHIIGFAKMAGDVADGAKGVLLFFVIAILITA
CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH
VMVYLFSKSLILTILPLACSLTAVVWQLGLLTVIGFGLDPMSILVPFLVFAIGVSHGVQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
INAVRRRVMDGQTTKAAAASAFRSLLVPGGVALLSDTVGFITLLSIDIGIIRELAISASL
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVGVIIFTNLILLPLVISFTELKAVKHAEPTAEEVRAEAIWRFLAKFATPKYAVVVIIAT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
TALYFVGLQQANQMKIGDLQGGAPALHQDSRYNLDTFFITDHFSITTDVMTVIVEATPEA
HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCH
CTYHDILTQIDEFEWLVRNTPGIESTVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH
IGQIPTTSGLLNGDCSVMPVYLFMKDHKAETIETVVAKVKAVAAKMDNEQLQFKLASGPV
HHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
GVMAATNEAVAAAQLPMMLYVYGAVFVLCLISFKSFKATVAVIIPLYVVSTLAQALMTQL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIGLAVSTLPVIALGVGIGVDYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGL
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHH
TLAIGVSTWFFSALKFQMDMGILLTFMFVVNMLGAIIILPALAAVFWRQAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA