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The map label for this gene is yebR [H]

Identifier: 120598621

GI number: 120598621

Start: 2076266

End: 2076724

Strand: Direct

Name: yebR [H]

Synonym: Sputw3181_1805

Alternate gene names: 120598621

Gene position: 2076266-2076724 (Clockwise)

Preceding gene: 120598620

Following gene: 120598622

Centisome position: 44.1

GC content: 44.01

Gene sequence:

>459_bases
ATGAAATCGCAATTTTATGAGTCACTGAATCGTCAAGCGTTAGCTTTGCTTGAAGGTGAAGATGATGTTGTGGCGGCAAT
GGCAAACTTTTCCGCCTTGCTGAATGATAATTTAACCGATCTTAACTGGGTTGGGTTTTATGTTATGCGTGGTGAGCAAT
TAGTGTTAGGCCCGTTCCAGGGTAAAGTGGCTTGTACCCGCATCCCTTTAGGAAAAGGCGTCTGTGGGACTGCCGCATAC
ACTAATCAGACGCAACGGGTTGCAGATGTACACCAATTTGATGGACACATCGCCTGTGACTCTGCCAGTAATTCTGAAAT
TGTTGTGCCAGTTCGTGCTAACGGAAAAGTTATTGCAGTGCTCGATATTGACAGTCCGAGCTTCGATCGTTTTGATGAAG
ACGACCAAAAAGGGCTGGAATTGTTAGTTAAAAGCTTTGAAAACTGCCTATTTGATTAA

Upstream 100 bases:

>100_bases
AGGCGTCGTTCAGGTTAATAGTACGCCAACGAATCAAGCGGTAACCAAGAAAACAGCAAAAAAAGCTGAAGCGGCAGAGT
AGACAAGGTTAGGAAATATA

Downstream 100 bases:

>100_bases
TTTGCGTGCAATAACACATAATTCATAGTCGCAATCGCTAGCGTGCGCCTTATAATATGCGCCAGCATCGATTAAGCCGG
TTTGACACCAATGTCATCAA

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKSQFYESLNRQALALLEGEDDVVAAMANFSALLNDNLTDLNWVGFYVMRGEQLVLGPFQGKVACTRIPLGKGVCGTAAY
TNQTQRVADVHQFDGHIACDSASNSEIVVPVRANGKVIAVLDIDSPSFDRFDEDDQKGLELLVKSFENCLFD

Sequences:

>Translated_152_residues
MKSQFYESLNRQALALLEGEDDVVAAMANFSALLNDNLTDLNWVGFYVMRGEQLVLGPFQGKVACTRIPLGKGVCGTAAY
TNQTQRVADVHQFDGHIACDSASNSEIVVPVRANGKVIAVLDIDSPSFDRFDEDDQKGLELLVKSFENCLFD
>Mature_152_residues
MKSQFYESLNRQALALLEGEDDVVAAMANFSALLNDNLTDLNWVGFYVMRGEQLVLGPFQGKVACTRIPLGKGVCGTAAY
TNQTQRVADVHQFDGHIACDSASNSEIVVPVRANGKVIAVLDIDSPSFDRFDEDDQKGLELLVKSFENCLFD

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=149, Percent_Identity=57.7181208053691, Blast_Score=187, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6322781, Length=159, Percent_Identity=44.6540880503145, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 16665; Mature: 16665

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQFYESLNRQALALLEGEDDVVAAMANFSALLNDNLTDLNWVGFYVMRGEQLVLGPFQ
CCCHHHHHHCHHEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEECCC
GKVACTRIPLGKGVCGTAAYTNQTQRVADVHQFDGHIACDSASNSEIVVPVRANGKVIAV
CCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPSFDRFDEDDQKGLELLVKSFENCLFD
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSQFYESLNRQALALLEGEDDVVAAMANFSALLNDNLTDLNWVGFYVMRGEQLVLGPFQ
CCCHHHHHHCHHEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEECCC
GKVACTRIPLGKGVCGTAAYTNQTQRVADVHQFDGHIACDSASNSEIVVPVRANGKVIAV
CCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPSFDRFDEDDQKGLELLVKSFENCLFD
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]