| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598585
Identifier: 120598585
GI number: 120598585
Start: 2039456
End: 2039929
Strand: Direct
Name: 120598585
Synonym: Sputw3181_1768
Alternate gene names: NA
Gene position: 2039456-2039929 (Clockwise)
Preceding gene: 120598584
Following gene: 120598586
Centisome position: 43.32
GC content: 44.94
Gene sequence:
>474_bases ATGGACAAGATGACTGACAGTATTCAACACACGCTCAAACAATTCGCCGCCGATAGTAGGCTAACCTCGGTTGCGCCATT GTGCAGTGAAGTCCCATTGTTTGACATTAACGCCTTGGGTGATTGGACCTATCTAGGCACATCGCTACCAGCAAAGTTTG CTAAGTTGTTCGCCAGTATTTTGCATTGCATCGATGATGAGTATTTCTTAATTACCCCAGTGGAGAAGGTGCGAGTGCGG GTTGAAGATGCCCCCTTACTGATTGTCGATTTCGAGCGAGCGCAACCCCATTCGCTGCTCAATGTGAAAACCAGTATTGA AACACAGCATCACAAAGTCGATATAAAACAGATGAAGCTCACCGATGACAGTGTTTATTTGCCGCTTGAGCGCGGTTTAT GGGGCAAATTAGGTCGGGCCTGTTACTATAATTTTGTGAATGAATTCAATTTATCTGATCTAGATGAGGAATGA
Upstream 100 bases:
>100_bases GCAATCCTTGAGGGTTACGAACTTGCTCTGTCTCTTGAACAGGACTTGTGATCAAGAGACAGGCCGCAAGGCTGGTTTTT TATGGATGACGGAGGCTTAG
Downstream 100 bases:
>100_bases ACTCGTAGATTAATCGCATCATTTGCTGTGGTCTTAGCTAGTTTATTATGGGTTAAGTGGTAGTATTAAAACTAACTCTG GGTTCCTATGATGGCGCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MDKMTDSIQHTLKQFAADSRLTSVAPLCSEVPLFDINALGDWTYLGTSLPAKFAKLFASILHCIDDEYFLITPVEKVRVR VEDAPLLIVDFERAQPHSLLNVKTSIETQHHKVDIKQMKLTDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLDEE
Sequences:
>Translated_157_residues MDKMTDSIQHTLKQFAADSRLTSVAPLCSEVPLFDINALGDWTYLGTSLPAKFAKLFASILHCIDDEYFLITPVEKVRVR VEDAPLLIVDFERAQPHSLLNVKTSIETQHHKVDIKQMKLTDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLDEE >Mature_157_residues MDKMTDSIQHTLKQFAADSRLTSVAPLCSEVPLFDINALGDWTYLGTSLPAKFAKLFASILHCIDDEYFLITPVEKVRVR VEDAPLLIVDFERAQPHSLLNVKTSIETQHHKVDIKQMKLTDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLDEE
Specific function: Unknown
COG id: COG3816
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17934; Mature: 17934
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKMTDSIQHTLKQFAADSRLTSVAPLCSEVPLFDINALGDWTYLGTSLPAKFAKLFASI CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHCCCCHHHHHHHHHHH LHCIDDEYFLITPVEKVRVRVEDAPLLIVDFERAQPHSLLNVKTSIETQHHKVDIKQMKL HHHHCCCEEEEECHHHEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCHHEECCEEEEE TDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLDEE CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDKMTDSIQHTLKQFAADSRLTSVAPLCSEVPLFDINALGDWTYLGTSLPAKFAKLFASI CCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHCCCCHHHHHHHHHHH LHCIDDEYFLITPVEKVRVRVEDAPLLIVDFERAQPHSLLNVKTSIETQHHKVDIKQMKL HHHHCCCEEEEECHHHEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCHHEECCEEEEE TDDSVYLPLERGLWGKLGRACYYNFVNEFNLSDLDEE CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA