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The map label for this gene is sdhD [H]

Identifier: 120598553

GI number: 120598553

Start: 1998937

End: 1999284

Strand: Direct

Name: sdhD [H]

Synonym: Sputw3181_1736

Alternate gene names: 120598553

Gene position: 1998937-1999284 (Clockwise)

Preceding gene: 120598552

Following gene: 120598554

Centisome position: 42.45

GC content: 44.54

Gene sequence:

>348_bases
ATGGTAACCAATGCAGCAAGTTTTGGACGCAGTGGTGTTCATGACTTTATTTTACTACGCGCTAGTGCAGTGATCCTCGC
CTGTTATACTATTTTCTTGGTTGGCTTTATTGCATGTAGTTCCCCTCTCACCTACGACGTTTGGCATGGCCTGTTTAGCG
CTCTGCCGATGAAAGTATTCACTCTTTTAGCGTTAGTCGCATTGTTAGTACATGCATGGATTGGTGTATGGCAAGTATTG
ACCGATTACGTTAAGTGCACGTCGTTACGTGGTGTTTTACAGTTCACCTTTGTCGTTACCGTCTTTTGTTATCTGGCGGC
TGGCATTGTTATTGTGTGGGGTGTCTAA

Upstream 100 bases:

>100_bases
TGGATACCGGTCGTTGGGAAGAGTTGGCTTCGGGTACCGCCTCAGCGAAAGCTGTTTTCGTGCTAACGGTAGCCTTTTCA
ATTGTAGCGGGGATCTGGGT

Downstream 100 bases:

>100_bases
GTGAGTATTCCAGTACGCGAATTTGATGCAGTAGTGATAGGAGCGGGCGGTGCGGGTATGCGCGCAGCTCTGCAGATTTC
TAAAGAAGGTAAAAGCTGTG

Product: putative succinate dehydrogenase, hydrophobic subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV

Sequences:

>Translated_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
>Mature_115_residues
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVGFIACSSPLTYDVWHGLFSALPMKVFTLLALVALLVHAWIGVWQVL
TDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=58.2608695652174, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12576; Mature: 12576

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVGFIACSSPLTYDVWHGLFSALPMKVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLALVALLVHAWIGVWQVLTDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTNAASFGRSGVHDFILLRASAVILACYTIFLVGFIACSSPLTYDVWHGLFSALPMKVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLALVALLVHAWIGVWQVLTDYVKCTSLRGVLQFTFVVTVFCYLAAGIVIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]