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The map label for this gene is ifcA [H]

Identifier: 120598393

GI number: 120598393

Start: 1798190

End: 1799743

Strand: Direct

Name: ifcA [H]

Synonym: Sputw3181_1576

Alternate gene names: 120598393

Gene position: 1798190-1799743 (Clockwise)

Preceding gene: 120598391

Following gene: 120598394

Centisome position: 38.19

GC content: 48.46

Gene sequence:

>1554_bases
ATGAGTAAAACTCAAGATATTGATACAGGCCGTCGGCAGTTGCTAAAAGGTGGGGCCGTGATGGCTGCTGGCTTTGGGGC
TGCAATAGCCTTACCTGCAACAGCCAATTGTGGCGTTGCTCCTGAAGTATTTGATGAGATTGTGGATGTATTAGTTGTCG
GCAGTGGCTTTGCTGGGATGTCTGCGGCATTACAAGCTAGAGAGGCTGGTGTGAGCGTTATGGTTGTGGACAAGATGCCA
GTCTTTGGTGGTAATTCAACTATCAATGGCGGTGCCATGGCTGTAGCGGGTTCTGAGTTGCAGAAACAAGCAGGCATTAA
GGATTCTGTCGATGAAATGGTCGCCGATATGATGCGAGCAGGTCGGGGCATGAACGATGTTGAGATGTTAAAACTGGTGT
GTAATGGCACGGCTGAATCTTGTCAGTGGTTGATTGAACATGGGGTTAAGTGGAAACCTTTCGTGCAGCATTTTGGTGGA
CACTCAATACAACGAGTCTTGCAAACAGTTGAAAGTTCAGGGGCTGGCATTATCAGACCGCTGATTAACGCCGCGAGAGA
TAAAGGCGTGGTGATGAGAAACCAGACCAAGCTCGAAAGCTTTGTGAAAGATCTCGATGGTCGCGTGATTGGGGTCGAAG
TTCGTGAAGGTTTTTATTTCCCTAATGAGCGAACCGGTAAAATACGTCGCATAGGCGCGCGCCGTGGTGTTGTTATGGCA
ACGGGGGGCTTTGGTCGCGATATTGAATATCGCATGATGCAACTACCTGAGTTAAATAACGACTTAGATTCCACCAATCA
TGCTGGTGCAACTTCAGAAGCTCTAAAGCAAATGATGCTCTTAGGTGCTAACCCTATTCATTTAGACCAAATTCAACTCG
GCCCATGGGCATCTCCCGATGAAAAAGGCTTTGGTACCGCATCCCAGTTCAACACGATTGCGACCTATCCTCACGGTATT
GTGGTGGATGTGCGCACTGGTGAACGTTTTTTCAATGAACTTGCAGATCGTAAAGCGAGAGCTGACGCCATCATGACTCG
CCGTGATGAACATGGTCAGCCTGTTTATCCTATTGGTTTTACTAATGCAGAAGGGGCTAGTAAGGCGCAAACCTTAGATT
GGGGACTGAAATATAAGGTGATTAGTAAAGCAGAAACCTTAGATGAACTTGCTGCTATTTATGGTATGCCGGCTAAAGCA
CTAAAAGCTCAAGTCGCCCGTTGGAACGAAGCGGTAAAAAGTGGTGTTGATAAAGAATTCGCACGTCCTCTGCAAGAAGC
CATTGTGCTAGATAAAGGGCCTTGGTATGCCGTTCGTATGTGGCCAAAAGTTCACTATTGTATGGGCGGCGTTAAAGTGA
ATACCCGATCAGAAGTACTGCATTTAGTCACCAACCAAGCCATTCCAGGGTTGTATGCCGCAGGCGAAGCAACCGGAGGA
ATTCACGGCGCTAGCCGTTTAGGCGCTTGCGCTGTCGCTGAGGGCGTTGTTACTGGTCGCAACGCAGGCCGAAATTGTGC
AGCGGCAAAGGCGGCGGTGCTTAAGCAAGCATAA

Upstream 100 bases:

>100_bases
CCAATCAAAGTTCCCCACTTAATTACCTCTTTTTAGGTGCTTGGCACAGAGCATGCACTTCCATGCTGACAAGTTCCAGC
CATTATTGAAGGAAGTAAGC

Downstream 100 bases:

>100_bases
TTAGATTTTATTAAAAATTACAATGTATTGGAGAATGGTAATGAATAAATCAGTGTTGATGGCATCGCTTACTTTAAGTC
TACTCTCTGGGAGTGCTTTA

Product: flavocytochrome c

Products: NA

Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MSKTQDIDTGRRQLLKGGAVMAAGFGAAIALPATANCGVAPEVFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVVDKMP
VFGGNSTINGGAMAVAGSELQKQAGIKDSVDEMVADMMRAGRGMNDVEMLKLVCNGTAESCQWLIEHGVKWKPFVQHFGG
HSIQRVLQTVESSGAGIIRPLINAARDKGVVMRNQTKLESFVKDLDGRVIGVEVREGFYFPNERTGKIRRIGARRGVVMA
TGGFGRDIEYRMMQLPELNNDLDSTNHAGATSEALKQMMLLGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGI
VVDVRTGERFFNELADRKARADAIMTRRDEHGQPVYPIGFTNAEGASKAQTLDWGLKYKVISKAETLDELAAIYGMPAKA
LKAQVARWNEAVKSGVDKEFARPLQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTRSEVLHLVTNQAIPGLYAAGEATGG
IHGASRLGACAVAEGVVTGRNAGRNCAAAKAAVLKQA

Sequences:

>Translated_517_residues
MSKTQDIDTGRRQLLKGGAVMAAGFGAAIALPATANCGVAPEVFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVVDKMP
VFGGNSTINGGAMAVAGSELQKQAGIKDSVDEMVADMMRAGRGMNDVEMLKLVCNGTAESCQWLIEHGVKWKPFVQHFGG
HSIQRVLQTVESSGAGIIRPLINAARDKGVVMRNQTKLESFVKDLDGRVIGVEVREGFYFPNERTGKIRRIGARRGVVMA
TGGFGRDIEYRMMQLPELNNDLDSTNHAGATSEALKQMMLLGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGI
VVDVRTGERFFNELADRKARADAIMTRRDEHGQPVYPIGFTNAEGASKAQTLDWGLKYKVISKAETLDELAAIYGMPAKA
LKAQVARWNEAVKSGVDKEFARPLQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTRSEVLHLVTNQAIPGLYAAGEATGG
IHGASRLGACAVAEGVVTGRNAGRNCAAAKAAVLKQA
>Mature_516_residues
SKTQDIDTGRRQLLKGGAVMAAGFGAAIALPATANCGVAPEVFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVVDKMPV
FGGNSTINGGAMAVAGSELQKQAGIKDSVDEMVADMMRAGRGMNDVEMLKLVCNGTAESCQWLIEHGVKWKPFVQHFGGH
SIQRVLQTVESSGAGIIRPLINAARDKGVVMRNQTKLESFVKDLDGRVIGVEVREGFYFPNERTGKIRRIGARRGVVMAT
GGFGRDIEYRMMQLPELNNDLDSTNHAGATSEALKQMMLLGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGIV
VDVRTGERFFNELADRKARADAIMTRRDEHGQPVYPIGFTNAEGASKAQTLDWGLKYKVISKAETLDELAAIYGMPAKAL
KAQVARWNEAVKSGVDKEFARPLQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTRSEVLHLVTNQAIPGLYAAGEATGGI
HGASRLGACAVAEGVVTGRNAGRNCAAAKAAVLKQA

Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Escherichia coli, GI1788928, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71986328, Length=482, Percent_Identity=27.3858921161826, Blast_Score=130, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6320788, Length=481, Percent_Identity=29.1060291060291, Blast_Score=151, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6322511, Length=484, Percent_Identity=26.2396694214876, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 55310; Mature: 55179

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTQDIDTGRRQLLKGGAVMAAGFGAAIALPATANCGVAPEVFDEIVDVLVVGSGFAGM
CCCCCCCHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
SAALQAREAGVSVMVVDKMPVFGGNSTINGGAMAVAGSELQKQAGIKDSVDEMVADMMRA
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHH
GRGMNDVEMLKLVCNGTAESCQWLIEHGVKWKPFVQHFGGHSIQRVLQTVESSGAGIIRP
CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHH
LINAARDKGVVMRNQTKLESFVKDLDGRVIGVEVREGFYFPNERTGKIRRIGARRGVVMA
HHHHHHCCCEEEECHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCHHHEECCCCCEEEE
TGGFGRDIEYRMMQLPELNNDLDSTNHAGATSEALKQMMLLGANPIHLDQIQLGPWASPD
ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECEEECCCCCCCC
EKGFGTASQFNTIATYPHGIVVDVRTGERFFNELADRKARADAIMTRRDEHGQPVYPIGF
CCCCCCHHHCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
TNAEGASKAQTLDWGLKYKVISKAETLDELAAIYGMPAKALKAQVARWNEAVKSGVDKEF
CCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
ARPLQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTRSEVLHLVTNQAIPGLYAAGEATGG
HHHHHHHHEECCCCEEEEEECCEEEHHCCCEEECHHHHHHHHHHHCCCCCEEECCCCCCC
IHGASRLGACAVAEGVVTGRNAGRNCAAAKAAVLKQA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKTQDIDTGRRQLLKGGAVMAAGFGAAIALPATANCGVAPEVFDEIVDVLVVGSGFAGM
CCCCCCHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
SAALQAREAGVSVMVVDKMPVFGGNSTINGGAMAVAGSELQKQAGIKDSVDEMVADMMRA
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHH
GRGMNDVEMLKLVCNGTAESCQWLIEHGVKWKPFVQHFGGHSIQRVLQTVESSGAGIIRP
CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHH
LINAARDKGVVMRNQTKLESFVKDLDGRVIGVEVREGFYFPNERTGKIRRIGARRGVVMA
HHHHHHCCCEEEECHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCHHHEECCCCCEEEE
TGGFGRDIEYRMMQLPELNNDLDSTNHAGATSEALKQMMLLGANPIHLDQIQLGPWASPD
ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECEEECCCCCCCC
EKGFGTASQFNTIATYPHGIVVDVRTGERFFNELADRKARADAIMTRRDEHGQPVYPIGF
CCCCCCHHHCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
TNAEGASKAQTLDWGLKYKVISKAETLDELAAIYGMPAKALKAQVARWNEAVKSGVDKEF
CCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
ARPLQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTRSEVLHLVTNQAIPGLYAAGEATGG
HHHHHHHHEECCCCEEEEEECCEEEHHCCCEEECHHHHHHHHHHHCCCCCEEECCCCCCC
IHGASRLGACAVAEGVVTGRNAGRNCAAAKAAVLKQA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10455032; 10581549 [H]