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The map label for this gene is yedS [H]

Identifier: 120598391

GI number: 120598391

Start: 1795199

End: 1796368

Strand: Direct

Name: yedS [H]

Synonym: Sputw3181_1574

Alternate gene names: 120598391

Gene position: 1795199-1796368 (Clockwise)

Preceding gene: 120598390

Following gene: 120598393

Centisome position: 38.13

GC content: 42.22

Gene sequence:

>1170_bases
ATGAAAAAGACATTGCTCGCTTTGATTATTCCAAGCTTATTGTTAACGGGAACATCTCAAGCCGTTGAACTGTATAATGA
CCAAACTAATAGCGTTAACATGATCGGTTGGTTAGGATTTACCGCATTAAATGATGGTCATGAAACTTCTGTTATAGATA
ATTTTTCTCGTGTTGGTTTTCGTTTCGACCGTCAAGAGAAAAATGGCTGGAGCTCCTTTGCCCATACGGAATGGGGTATC
AATATGGTGACCAGCGATGACGGCCTTATATACACGCAAGGCCAAGGTGGTGGTCAGTTATCGGCATCCAAAAATTCAGA
TTTTCTATTCAATCGACTGGGTTATGTTGGGATGTCCCATGAGAAATGGGGAAAGATCAGTTTTGGTAAGCAATGGGGGG
CTTACTATGATGTTGCTTACACAACTGATGTGCTCAATGCTTTCACAGGTTGGTCTGTGGGGGCTTATACCTTCGGTGAC
GGTGGTTTAACAGGAGCTGGACGTGCCGATGCTGCGCTACAATACCGTAATACTTTCGGTAACCTGCATGTCGCAGTGCA
GTATGCCTCTAAACAAAATAGCGATGTTGCCTTGTACGATGGTAATGGTGCTCCCTTGAAAGATGGTTCGGAATTGAGTT
TCGAACCTAGCTATGGTGCAAGTGTAACTTACAACTTTACTGATAAATTTAAAGTGCTAGCGGGATTTAATCGTGGTGAT
TTTACCGGAAATCTTGCAGGCCAAGAGGTTGATAACACTAACCAAATTATTGGTATTGGCGCCCAATACGGTAGCTTCTA
TCAATATGCTCCAGGTCGCGATGCTGACGGTTTATACGTAGGTTTTAACGCTCATAAGAGTGAGCAAAACGAATTAGTGG
GTGGAGATTTATATGATTCAACTGGAGCTGAGTTTATTGTTGCTTATCAGTATGACAGTGGTTTCGTTCCAACCATATTA
CTGACATATCAAGATCTTGATACCGATGAAAATACGGGGGTCCAAGGAAAATGGGCACGCCAATTTGCAGTGCTAGGTCT
GCATTATCGTTATAGCCGCGATACAATTATGTACGTTGAGGCCAAAATTGATTTCAGCAACATGGATGATAAAGCTTATG
AAGATCTACAAGAAAACAACTATGCGGTGGGAATCCGTTATTTCTTCTAG

Upstream 100 bases:

>100_bases
ACCTATGGCACATAACCTGCTTAGTATTGATTGGAGAAAATAATATATTAAATAAATCATGTGATTATATGTGATTTTGC
TGAATTTTAAGGTAGATAAA

Downstream 100 bases:

>100_bases
ATCCTATGGTTAGTCATTAATTTTTCAAAGGTCACCTATGTGACCTTTGTTATTTATGCACTTTATTTATGCACTTTGTT
AACCGATGTTTTTTATTTTT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKKTLLALIIPSLLLTGTSQAVELYNDQTNSVNMIGWLGFTALNDGHETSVIDNFSRVGFRFDRQEKNGWSSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKNSDFLFNRLGYVGMSHEKWGKISFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHVAVQYASKQNSDVALYDGNGAPLKDGSELSFEPSYGASVTYNFTDKFKVLAGFNRGD
FTGNLAGQEVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYQYDSGFVPTIL
LTYQDLDTDENTGVQGKWARQFAVLGLHYRYSRDTIMYVEAKIDFSNMDDKAYEDLQENNYAVGIRYFF

Sequences:

>Translated_389_residues
MKKTLLALIIPSLLLTGTSQAVELYNDQTNSVNMIGWLGFTALNDGHETSVIDNFSRVGFRFDRQEKNGWSSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKNSDFLFNRLGYVGMSHEKWGKISFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHVAVQYASKQNSDVALYDGNGAPLKDGSELSFEPSYGASVTYNFTDKFKVLAGFNRGD
FTGNLAGQEVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYQYDSGFVPTIL
LTYQDLDTDENTGVQGKWARQFAVLGLHYRYSRDTIMYVEAKIDFSNMDDKAYEDLQENNYAVGIRYFF
>Mature_389_residues
MKKTLLALIIPSLLLTGTSQAVELYNDQTNSVNMIGWLGFTALNDGHETSVIDNFSRVGFRFDRQEKNGWSSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKNSDFLFNRLGYVGMSHEKWGKISFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHVAVQYASKQNSDVALYDGNGAPLKDGSELSFEPSYGASVTYNFTDKFKVLAGFNRGD
FTGNLAGQEVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYQYDSGFVPTIL
LTYQDLDTDENTGVQGKWARQFAVLGLHYRYSRDTIMYVEAKIDFSNMDDKAYEDLQENNYAVGIRYFF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=392, Percent_Identity=23.469387755102, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787160, Length=408, Percent_Identity=24.5098039215686, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786436, Length=413, Percent_Identity=24.455205811138, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42956; Mature: 42956

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLALIIPSLLLTGTSQAVELYNDQTNSVNMIGWLGFTALNDGHETSVIDNFSRVGF
CCHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCE
RFDRQEKNGWSSFAHTEWGINMVTSDDGLIYTQGQGGGQLSASKNSDFLFNRLGYVGMSH
EEECCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCCCHHHHHHCCCCCCC
EKWGKISFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGDGGLTGAGRADAALQYRNTFG
CCCCCEECCCCCCCEEEEEEHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
NLHVAVQYASKQNSDVALYDGNGAPLKDGSELSFEPSYGASVTYNFTDKFKVLAGFNRGD
CEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEECCCCEEEEECCCCCC
FTGNLAGQEVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDS
CCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
TGAEFIVAYQYDSGFVPTILLTYQDLDTDENTGVQGKWARQFAVLGLHYRYSRDTIMYVE
CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHEEEEEEEEEEECCCEEEEEE
AKIDFSNMDDKAYEDLQENNYAVGIRYFF
EEECCCCCCHHHHHHHHHCCEEEEEEEEC
>Mature Secondary Structure
MKKTLLALIIPSLLLTGTSQAVELYNDQTNSVNMIGWLGFTALNDGHETSVIDNFSRVGF
CCHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCE
RFDRQEKNGWSSFAHTEWGINMVTSDDGLIYTQGQGGGQLSASKNSDFLFNRLGYVGMSH
EEECCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCCCHHHHHHCCCCCCC
EKWGKISFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGDGGLTGAGRADAALQYRNTFG
CCCCCEECCCCCCCEEEEEEHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
NLHVAVQYASKQNSDVALYDGNGAPLKDGSELSFEPSYGASVTYNFTDKFKVLAGFNRGD
CEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEECCCCEEEEECCCCCC
FTGNLAGQEVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDS
CCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
TGAEFIVAYQYDSGFVPTILLTYQDLDTDENTGVQGKWARQFAVLGLHYRYSRDTIMYVE
CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHEEEEEEEEEEECCCEEEEEE
AKIDFSNMDDKAYEDLQENNYAVGIRYFF
EEECCCCCCHHHHHHHHHCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]