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The map label for this gene is kpsD [H]

Identifier: 120598283

GI number: 120598283

Start: 1650150

End: 1652636

Strand: Direct

Name: kpsD [H]

Synonym: Sputw3181_1461

Alternate gene names: 120598283

Gene position: 1650150-1652636 (Clockwise)

Preceding gene: 120598282

Following gene: 120598284

Centisome position: 35.05

GC content: 45.48

Gene sequence:

>2487_bases
GTGTTACAACAAATCAAAAAATTCATCATAGTTGGCCTTAGCGCCACGATATTGATGGGCGCGCAGGCGCAAGCCGTTAC
GCCCTCTCCGCAAATGATTGAACAATTCAAACAACTACCTAAATCAGAGCAAGAACGTTTAGCTCGCCAGTACGGTATCG
ATCCGTCAATGATTACGGGAGCCTCGGCGACCTCTACAGTTATTGAAAACCCAGCCGTGGTTACCCCACGTGCAGCAACA
AATAATGTGGTTGATCAATCTGAGGACGATAAGCTTAATCAAGCAACTAAAACTGAAGCGAAAGTTGAAGCAATTGAAGA
TAAAAAAGAAAATCAACTCAAGCGTTTTGGGTATGATCTTTTTGCGGGCTCTCCCAGTACCTTTGCCCCAGTTTCCGATG
TGCCAGTGCCTGCCGAATATATGATGGGCCCAGGTGACACCTTAAATGTGCAACTTTTTGGCAAAGAAAATAATCAGTTT
ACATTAACCGTAGGCCGCGATGGCGCAGTGCAATTCCCCAATCTGGGCCCTATTTCACTAGTCGGGTTAACCTTTGCTGA
AACACGCGAGTTACTACAACAAAAAATCAGCCAAAGCATGATAGGCATTGAGTCCAATATCACTATGGGTGAGTTGCGTT
CAATTCGGATTTTTGTGGCGGGCGACGCTTACAAGCCAGGATCCTACACAGTGTCAAGCTTATCAACTATTACCCAAGCC
CTGTTTATCTCGGGTGGCGTAAACCAAATCGGTAGTTTGCGTGATATCCAATTAAAGCGCTCCGGTAGAACTATTGGCCG
ATTAGACTTGTATGATTTATTGCTCCGCGGCGATGCTTCGGGGGATATGCGTTTACAATCTGGTGACGTAGTCTTTATTC
CATCATCTGGTGGTACAGTCAGTGTGATGGGGGAAGTTCGTCGCCCGGCGATTTACGAGCTTAAAAATAACGAGACCATG
GCCGATGTTATTAACATGGCCAGTGGCTTAAACCCTGGTGCATACCCTAAAGCCAGCACGGTTGAACGTTACAGTAAAGA
CTCTGTTAAAACAGTAATAAGCGTTGATTTAACTGAAAACTCAGGCCTAAGCACACAGGCTAAAAATGGCGACTTACTCA
ATGTGCGCTCAGCATCAAGCCGTATTGACAATGCTATTGCGCTTTCTGGCGCCGTAATTCGCCCAGGTAAATACCAATGG
ACTAATGGCTTAACTGTTGCCGATTTATTGCCTTCGATCTGGGGTGACTTAACCATCTCTGCGGACTTGGATTACAGTTT
GTTGGTGAGAGAAATTAACCAACGGGGCGATATTGAAGTTGAGCGCATTAATCTAGGTCGTGCTATTGGTGAACCAAAAT
CCCATTACAATCCCAAGCTAAAACCACGTGATTCGATTATTGTGTTTGACTATGCTGACCGTGAAGCGTTGCTAAAACCG
ATAATTCAAAAACTAAGAGAACAAAGCCGTTTTGGTGATGCGGCCAAGCTGGTTAATATCAATGGTAATGTTCGCTTCCC
TGGTCAGTACCCAATAACGGTTAATGCGGATGTTAAAGAGTTACTCATCGCCGCTGGTGGGCTAGAAGAAGGGGCATATA
CCTTATCCGCAGAGCTGACTCGTCAACAAGTATCTGAGCAAAATGGTGTAACTGTTGAGCATATGCAGCTAAGTTTAGAC
CGTGTTATGCAAAACGATCCAGCAGCGAACATAAAGCTGCAAAGCCGTGATGTATTAACGGTTCGTACCTTGCCCGATTG
GCAAGATACACGTTGGATAACTATTAAAGGTGAAGTTAAGTTCCCTGGTACTTATAGTATTCAGCGCGGTGAAACCCTCA
AAGATGTGTTGGCCCGTGCGGGTGGCTTAACATCCGACGCCGCACCGCGTAGTGCAGTATTTTTACGCCAATCGATTAAA
GAAAAAGAGCAACTTGAAATTGCTAAACTTGCTGACGAACTACGCCGCGAAATTGCGGCTAAAGCCTTGACCAAGGATAC
GCCAACGGTAGGTTATAACGATGCACAGATGATGCTTAATCAGCTAGAAAACGTCAAAACAGTGGGCCGCCTAGTGGTTG
ATATCAACGCTATTCAGCTCGGTATTGAAAGTGCAAATTTAAAGCTTGAAGATGCCGATGCGTTGTTCATTCCAGCAACC
AACCAAACCGTTTCTGTGATGGGCCAAGTTCAACACCCAAGCACTCACAGATACAAGCAAGGGTTAACTTTTGACCAATA
TTTAGCTTTATCCGGTGGTGCGCGTAAGCGTGCTGACGAGTCACGCTCATATATCCTAAGGGCCGATGGCTCGGTCGAAA
TGCCAAGTTCCTCTTTCTGGTTTAATGGCGGTAGCGTCATAGAGCCTGGTGATACTATCGTCGTGCCATTAGATACCGAA
TACAAAGATAACCTAACGTTGTGGACGCAAGTTACGGGCATTATCTTTAATACCGCAGTTGCTGTATCTGCTATTGCAGG
AATCTAG

Upstream 100 bases:

>100_bases
AAATGCTTTAAATGCTTTAAATGCTTTAAATGCTTTAAATGCTTTAAATGCTTTAAATGCTTTAAATGTTTTCCATCTTT
AACCCAATCGGAGATATCTG

Downstream 100 bases:

>100_bases
ACGCGAGAAGCCTCCAGAATCTAGGACGCTTCGCTCTAGGACGGCCTCTAGGCCCTAGAACCTAGCACCTTCTTTAAATA
TCTTTAAGCTTTCCTAGGGC

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MLQQIKKFIIVGLSATILMGAQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGASATSTVIENPAVVTPRAAT
NNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQF
TLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQA
LFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTVSVMGEVRRPAIYELKNNETM
ADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTENSGLSTQAKNGDLLNVRSASSRIDNAIALSGAVIRPGKYQW
TNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVTVEHMQLSLD
RVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVKFPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIK
EKEQLEIAKLADELRREIAAKALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFWFNGGSVIEPGDTIVVPLDTE
YKDNLTLWTQVTGIIFNTAVAVSAIAGI

Sequences:

>Translated_828_residues
MLQQIKKFIIVGLSATILMGAQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGASATSTVIENPAVVTPRAAT
NNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQF
TLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQA
LFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTVSVMGEVRRPAIYELKNNETM
ADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTENSGLSTQAKNGDLLNVRSASSRIDNAIALSGAVIRPGKYQW
TNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVTVEHMQLSLD
RVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVKFPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIK
EKEQLEIAKLADELRREIAAKALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFWFNGGSVIEPGDTIVVPLDTE
YKDNLTLWTQVTGIIFNTAVAVSAIAGI
>Mature_828_residues
MLQQIKKFIIVGLSATILMGAQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGASATSTVIENPAVVTPRAAT
NNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQF
TLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQA
LFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTVSVMGEVRRPAIYELKNNETM
ADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTENSGLSTQAKNGDLLNVRSASSRIDNAIALSGAVIRPGKYQW
TNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVTVEHMQLSLD
RVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVKFPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIK
EKEQLEIAKLADELRREIAAKALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFWFNGGSVIEPGDTIVVPLDTE
YKDNLTLWTQVTGIIFNTAVAVSAIAGI

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=209, Percent_Identity=25.8373205741627, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1788376, Length=209, Percent_Identity=24.8803827751196, Blast_Score=76, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 90235; Mature: 90235

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQIKKFIIVGLSATILMGAQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITG
CHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCC
ASATSTVIENPAVVTPRAATNNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDL
CCCCHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQFTLTVGRDGAVQFPNLGPISL
ECCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCEECCCCCCCCE
VGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQA
EEEEHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHHHH
LFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTV
HHHCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCEE
SVMGEVRRPAIYELKNNETMADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTEN
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECC
SGLSTQAKNGDLLNVRSASSRIDNAIALSGAVIRPGKYQWTNGLTVADLLPSIWGDLTIS
CCCCCCCCCCCEEEECCHHHHHCCCEEECCEEECCCCEECCCCCCHHHHHHHHHCCEEEE
ADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKP
CCCCHHHHHHHHHCCCCEEEEEEECCHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHH
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELT
HHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCCCEEEHHHHH
RQQVSEQNGVTVEHMQLSLDRVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVK
HHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEEEEE
FPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIKEKEQLEIAKLADELRREIAA
CCCCEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPAT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCEEEECCCEEEEECC
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFW
CCEEEEEEECCCCCCHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCEE
FNGGSVIEPGDTIVVPLDTEYKDNLTLWTQVTGIIFNTAVAVSAIAGI
ECCCCEECCCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLQQIKKFIIVGLSATILMGAQAQAVTPSPQMIEQFKQLPKSEQERLARQYGIDPSMITG
CHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCC
ASATSTVIENPAVVTPRAATNNVVDQSEDDKLNQATKTEAKVEAIEDKKENQLKRFGYDL
CCCCHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQLFGKENNQFTLTVGRDGAVQFPNLGPISL
ECCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCEECCCCCCCCE
VGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQA
EEEEHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHHHH
LFISGGVNQIGSLRDIQLKRSGRTIGRLDLYDLLLRGDASGDMRLQSGDVVFIPSSGGTV
HHHCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCEE
SVMGEVRRPAIYELKNNETMADVINMASGLNPGAYPKASTVERYSKDSVKTVISVDLTEN
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECC
SGLSTQAKNGDLLNVRSASSRIDNAIALSGAVIRPGKYQWTNGLTVADLLPSIWGDLTIS
CCCCCCCCCCCEEEECCHHHHHCCCEEECCEEECCCCEECCCCCCHHHHHHHHHCCEEEE
ADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPKLKPRDSIIVFDYADREALLKP
CCCCHHHHHHHHHCCCCEEEEEEECCHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHH
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELT
HHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCCCEEEHHHHH
RQQVSEQNGVTVEHMQLSLDRVMQNDPAANIKLQSRDVLTVRTLPDWQDTRWITIKGEVK
HHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEEEEE
FPGTYSIQRGETLKDVLARAGGLTSDAAPRSAVFLRQSIKEKEQLEIAKLADELRREIAA
CCCCEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KALTKDTPTVGYNDAQMMLNQLENVKTVGRLVVDINAIQLGIESANLKLEDADALFIPAT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCEEEECCCEEEEECC
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPSSSFW
CCEEEEEEECCCCCCHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCEE
FNGGSVIEPGDTIVVPLDTEYKDNLTLWTQVTGIIFNTAVAVSAIAGI
ECCCCEECCCCEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]