| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is flhB
Identifier: 120598263
GI number: 120598263
Start: 1625515
End: 1626645
Strand: Direct
Name: flhB
Synonym: Sputw3181_1440
Alternate gene names: 120598263
Gene position: 1625515-1626645 (Clockwise)
Preceding gene: 120598262
Following gene: 120598264
Centisome position: 34.52
GC content: 44.39
Gene sequence:
>1131_bases ATGGCTGAAGAGAGCAGCGGCGAACGTAGTGAGGAACCCACAGGGAGGCGCCTTGAACAGGCGCGTGAAAAAGGCCAAGT TGCTCGTTCAAAAGAACTGGGGACTGCCGCGGTATTACTTTCCGCAGCAACGGGGTTTTATATGCTTGGCCCTGGTATCG CAACGGCACTCTCCCATGTGTTTGAACGTGTTTTTACTATGGATCGCGCTCAAATTTATGATACTAACCAAATGTTTAAT GTTTGGGGGTTGGTCGCGGGTGAAATTGCATGGCCAATGCTTAAAATCATGTTGCTGATTGTGGTGGTGGCTTTTATTGG TAATGTGTCCCTCGGTGGGATGAACTTTTCAACCCAAGCTATGATGCCCAAAGCCAGTAAAATGAGTCCTCTTGCTGGTT TTAAGCGTATGTTTGGGGTGCAAGCGCTCGTTGAGTTGACTAAGGGAATTGCTAAGTTCTCCGTAGTTGCTTTTTCGGCT TACTTTCTTTTAAGTTACTATTTTAATGATATTTTATTGTTATCAAGTGATCACTTACCAGGGAATGTTCACCATGCGTT AGATCTGTTGATATGGATGTTCATTTTACTCTGTTCTTCTGTGTTATTGATTGTGGTCATTGATGTGCCATTTCAGATTT GGAATCACAATAAACAACTGAAAATGACCAAACAAGAAGTCAAAGATGAATATAAAGACACAGAAGGTAAGCCTGAAGTT AAAGGACGCGTTCGACAAATGCAGCGAGAGCTTGCACAGCGTCGAATGATGGCCGAAGTACCCAATGCGGACGTGATTGT CGTCAATCCTGAGCATTATGCCGTGGCGGTCAAATACGATGTCAAGCGCTCTGCTGCACCGTTTGTCATTGCCAAGGGTG TAGATGATGTGGCGTTTAAGATCCGCGAAGTCGCCCGTGAGTACAATATTGCGATTGTGTCAGCTCCCCCATTGGCAAGG GCAATCTATCATACGACTAAATTAGATCAGCAAATACCTGAGGGGTTATTTACTGCCGTGGCTCAGGTTTTAGCCTATGT TTTCCAATTGCGTCAATACCAAAAGGGACGGGGACGTAAACCTATTCCTATCCCATTAAATCAGCCTATCCCTGATGATT TAAAATATTAA
Upstream 100 bases:
>100_bases ATTTTGACGAAGTATGGGCTGCAGCTCAGGTTTTGCTATGTGATATTTTGGGTCTTCAATGTCAAGCCGATGGCTTGATA TAAGGTTATAGGAACTCAGT
Downstream 100 bases:
>100_bases TGGCTTGCTCGTTCACTCTTCAAATTTTAAGTGTCCTCTTGGCGCGATTTTTGCTTTTCCGCTTTTATACGTCAAAGTTT AGGTAATAGTGAATGGATGT
Product: flagellar biosynthesis protein FlhB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MAEESSGERSEEPTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQIYDTNQMFN VWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPLAGFKRMFGVQALVELTKGIAKFSVVAFSA YFLLSYYFNDILLLSSDHLPGNVHHALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEV KGRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIAIVSAPPLAR AIYHTTKLDQQIPEGLFTAVAQVLAYVFQLRQYQKGRGRKPIPIPLNQPIPDDLKY
Sequences:
>Translated_376_residues MAEESSGERSEEPTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQIYDTNQMFN VWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPLAGFKRMFGVQALVELTKGIAKFSVVAFSA YFLLSYYFNDILLLSSDHLPGNVHHALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEV KGRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIAIVSAPPLAR AIYHTTKLDQQIPEGLFTAVAQVLAYVFQLRQYQKGRGRKPIPIPLNQPIPDDLKY >Mature_375_residues AEESSGERSEEPTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQIYDTNQMFNV WGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPLAGFKRMFGVQALVELTKGIAKFSVVAFSAY FLLSYYFNDILLLSSDHLPGNVHHALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVK GRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIAIVSAPPLARA IYHTTKLDQQIPEGLFTAVAQVLAYVFQLRQYQKGRGRKPIPIPLNQPIPDDLKY
Specific function: Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin [H]
COG id: COG1377
COG function: function code NU; Flagellar biosynthesis pathway, component FlhB
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type III secretion exporter family [H]
Homologues:
Organism=Escherichia coli, GI1788188, Length=376, Percent_Identity=41.2234042553192, Blast_Score=261, Evalue=7e-71,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006136 - InterPro: IPR006135 [H]
Pfam domain/function: PF01312 Bac_export_2 [H]
EC number: NA
Molecular weight: Translated: 42124; Mature: 41993
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEESSGERSEEPTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHH FERVFTMDRAQIYDTNQMFNVWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH MMPKASKMSPLAGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLP HCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC GNVHHALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH KGRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFK HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCCCCEEEECCCHHHHHH IREVAREYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLRQYQKGRGRK HHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PIPIPLNQPIPDDLKY CCCCCCCCCCCCCCCC >Mature Secondary Structure AEESSGERSEEPTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHH FERVFTMDRAQIYDTNQMFNVWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH MMPKASKMSPLAGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLP HCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC GNVHHALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH KGRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFK HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCCCCEEEECCCHHHHHH IREVAREYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLRQYQKGRGRK HHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PIPIPLNQPIPDDLKY CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002587; 11677609; 3298217 [H]