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The map label for this gene is fliR

Identifier: 120598262

GI number: 120598262

Start: 1624700

End: 1625497

Strand: Direct

Name: fliR

Synonym: Sputw3181_1439

Alternate gene names: 120598262

Gene position: 1624700-1625497 (Clockwise)

Preceding gene: 120598261

Following gene: 120598263

Centisome position: 34.51

GC content: 45.61

Gene sequence:

>798_bases
ATGGAGCTGTTGCTCGATACCTTAATGCAGACCATCGCATCTTACATGTGGCCGTTATTTCGCGTTGCAAGCATGTTGAT
GGTGATGGTGGTATTTGGCGCCGCAACGACTCCTGCTAGAGTGCGTTTACTCCTTGCCATGGCGATTACCTTTGCAATTG
CGCCTGTTTTGCCTCCGGTGGAGAATGCGGATTTATTTTCCCTTAGTGCTGTTTTTATTACGGCGCAACAAATTATTATT
GGCGTTGCGATGGGGTTTGTTTCCCAGATGGTAATGCAGACTTTTGTATTAACAGGGCAAATTATTGGTATGCAAACCAG
TTTAGGCTTTGCCTCTATGGTTGACCCTGGTTCTGGACAACAAACCCCTGTCATTGGTAACTTTTTCCTCTTGCTTGCGA
CGCTGATTTTTCTGGCTGTTGATGGTCACCTTCTCATGATCCGTATGCTAGTCGCAAGTTTTGAGACTCTTCCTATTTCT
AACCAAGGGCTAACGCTTACAAGCTACAGATCACTTGCAGAGTGGGGCTCGTATATGTTTGGCGCGGCTTTGACCATGTC
AATTTCGGCGATCATTGCGCTGTTACTGGTTAACCTCTCTTTTGGGGTAATGACCCGTGCCGCACCACAGTTGAATATTT
TTTCTATTGGTTTTCCTATCACTATGATTGGTGGGCTTTTAATCCTTTGGCTAACGCTGACGCCAGTAATGGCGCATTTT
GACGAAGTATGGGCTGCAGCTCAGGTTTTGCTATGTGATATTTTGGGTCTTCAATGTCAAGCCGATGGCTTGATATAA

Upstream 100 bases:

>100_bases
TTATTTGGACTGATGTTTATGGGGCATTGGTTAGTTCAAACCTTAATGGATTTTTTCATTGAGATGGTTAACCGTATTCC
CCAAGTGATAGGTTAAGGCT

Downstream 100 bases:

>100_bases
GGTTATAGGAACTCAGTATGGCTGAAGAGAGCAGCGGCGAACGTAGTGAGGAACCCACAGGGAGGCGCCTTGAACAGGCG
CGTGAAAAAGGCCAAGTTGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLSAVFITAQQIII
GVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
DEVWAAAQVLLCDILGLQCQADGLI

Sequences:

>Translated_265_residues
MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLSAVFITAQQIII
GVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
DEVWAAAQVLLCDILGLQCQADGLI
>Mature_265_residues
MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLSAVFITAQQIII
GVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRSLAEWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
DEVWAAAQVLLCDILGLQCQADGLI

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=243, Percent_Identity=39.917695473251, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28533; Mature: 28533

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ENADLFSLSAVFITAQQIIIGVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWAAAQVLLCDILGLQCQADGLI
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELLLDTLMQTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
ENADLFSLSAVFITAQQIIIGVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWAAAQVLLCDILGLQCQADGLI
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8282695; 9097040; 9278503 [H]