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The map label for this gene is yfbE [C]

Identifier: 120598202

GI number: 120598202

Start: 1569710

End: 1570858

Strand: Direct

Name: yfbE [C]

Synonym: Sputw3181_1379

Alternate gene names: 120598202

Gene position: 1569710-1570858 (Clockwise)

Preceding gene: 120598201

Following gene: 120598203

Centisome position: 33.34

GC content: 40.82

Gene sequence:

>1149_bases
ATGATTCTTTATGGAAAACAGGATATAAATCAAGTTGATATTGATGCAGTTATTAATGTGCTGCAGTCTGGCTTCCTTAC
TCAGGGACCAAAAGTTACTGAATTTGAGCAAGCAATCTCTGAATATGTCGGTGCTAATTATAGTGTTGCAGTCAACAGTG
CTACTTCGGCATTACATATCGCTTGTTTAGCCTTAGGTGTTGTGAGCAATGATTTGGTATGGACGACGCCCATTACCTTT
GTTGCCTCGGCAAACTGTGCCCTTTATTGCGGTGCAGAGATTGATTTTGTTGATGTTGAACCTGCGACGGGAAATATGTC
GTCTTCGGCCTTATCTGCAAAGTTGCTCTTGGCTAATGCAAATGGTCGGTTACCAAAAGTGATCATCGCTGTGCATATGG
CGGGACATTCTTGCAATATGCAAGCTATTGCGCAGTTGGCTAAACAGTATGGCATTAAAGTGATTGAGGATGCCTCCCAT
GGCATTGGAGGATCTTACCAATCAAAAAAAATTGGAGCTTGCCAATATAGCGATATTACAATTTTTAGTTTTCATCCGGT
AAAAATAATTACCACGGCTGAAGGCGGGGTTGCTACAACAAACAGTAAACCTATTGCTGACGCAATGGAAATGTATCGAA
GCCATGGTATTACTAAAGATCCTGCCTTAATGGAAAGGCCGCAAGAGGGCGACTGGTATTATGAGCAGCACCATTTAGGT
TTCAATTATCGGATGACGGATCTGCAAGCTGCTCTCGGAGTGTCTCAATTAACTCGGATAAACGAGTTTGTGGAAAAACG
TAATATATTAGCTGCAATATATCGTAGTCAACTTACTGACTTACCTATCAATATTGTTGAACCAATAGAACAATCCTACA
GTGCAAGGCATTTGTTTATCATTAGGTTATTACAACCTGATAAACGTAAAGCGATTTTTGACGCAATGCGTGCTCAAGGC
ATTCAAGTGCATGTGCATTATTTTCCTGTTCATCTTCAACCTTACTATCAGAAACTCGGGTTTAGTGTTGGACAATTTCC
TGAGGCTGAGCGTTTCTATCGGTCGATACTGACGTTGCCTTTATATCCTAATCTTACTGCTGAGCAGATTGGTTATATCT
GTGACAACTTAAGGGAATTGTTGATATGA

Upstream 100 bases:

>100_bases
ATGAAAAGGGTCAAGCAGTTTCACAAGGATTTGAATACCACTCGGGTAACAATCCACATTTTTTAAGTATTGATGAAATA
CTAAAACTGGATTCAATATC

Downstream 100 bases:

>100_bases
GAGTGGCGATTATTCCCGCACGAGGAGGAAGCAAGCGTATTGCGCATAAAAATATTCGCAATTTTAATGGTAAGCCAATG
ATTTCGTATCCTATCACTGC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MILYGKQDINQVDIDAVINVLQSGFLTQGPKVTEFEQAISEYVGANYSVAVNSATSALHIACLALGVVSNDLVWTTPITF
VASANCALYCGAEIDFVDVEPATGNMSSSALSAKLLLANANGRLPKVIIAVHMAGHSCNMQAIAQLAKQYGIKVIEDASH
GIGGSYQSKKIGACQYSDITIFSFHPVKIITTAEGGVATTNSKPIADAMEMYRSHGITKDPALMERPQEGDWYYEQHHLG
FNYRMTDLQAALGVSQLTRINEFVEKRNILAAIYRSQLTDLPINIVEPIEQSYSARHLFIIRLLQPDKRKAIFDAMRAQG
IQVHVHYFPVHLQPYYQKLGFSVGQFPEAERFYRSILTLPLYPNLTAEQIGYICDNLRELLI

Sequences:

>Translated_382_residues
MILYGKQDINQVDIDAVINVLQSGFLTQGPKVTEFEQAISEYVGANYSVAVNSATSALHIACLALGVVSNDLVWTTPITF
VASANCALYCGAEIDFVDVEPATGNMSSSALSAKLLLANANGRLPKVIIAVHMAGHSCNMQAIAQLAKQYGIKVIEDASH
GIGGSYQSKKIGACQYSDITIFSFHPVKIITTAEGGVATTNSKPIADAMEMYRSHGITKDPALMERPQEGDWYYEQHHLG
FNYRMTDLQAALGVSQLTRINEFVEKRNILAAIYRSQLTDLPINIVEPIEQSYSARHLFIIRLLQPDKRKAIFDAMRAQG
IQVHVHYFPVHLQPYYQKLGFSVGQFPEAERFYRSILTLPLYPNLTAEQIGYICDNLRELLI
>Mature_382_residues
MILYGKQDINQVDIDAVINVLQSGFLTQGPKVTEFEQAISEYVGANYSVAVNSATSALHIACLALGVVSNDLVWTTPITF
VASANCALYCGAEIDFVDVEPATGNMSSSALSAKLLLANANGRLPKVIIAVHMAGHSCNMQAIAQLAKQYGIKVIEDASH
GIGGSYQSKKIGACQYSDITIFSFHPVKIITTAEGGVATTNSKPIADAMEMYRSHGITKDPALMERPQEGDWYYEQHHLG
FNYRMTDLQAALGVSQLTRINEFVEKRNILAAIYRSQLTDLPINIVEPIEQSYSARHLFIIRLLQPDKRKAIFDAMRAQG
IQVHVHYFPVHLQPYYQKLGFSVGQFPEAERFYRSILTLPLYPNLTAEQIGYICDNLRELLI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=32.7127659574468, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI2367285, Length=372, Percent_Identity=28.2258064516129, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42266; Mature: 42266

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILYGKQDINQVDIDAVINVLQSGFLTQGPKVTEFEQAISEYVGANYSVAVNSATSALHI
CEEECCCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHH
ACLALGVVSNDLVWTTPITFVASANCALYCGAEIDFVDVEPATGNMSSSALSAKLLLANA
HHHHHHHHCCCEEEECCEEEEEECCEEEEECCEEEEEECCCCCCCCCCHHHEEEEEEECC
NGRLPKVIIAVHMAGHSCNMQAIAQLAKQYGIKVIEDASHGIGGSYQSKKIGACQYSDIT
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCEE
IFSFHPVKIITTAEGGVATTNSKPIADAMEMYRSHGITKDPALMERPQEGDWYYEQHHLG
EEEECCEEEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCC
FNYRMTDLQAALGVSQLTRINEFVEKRNILAAIYRSQLTDLPINIVEPIEQSYSARHLFI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE
IRLLQPDKRKAIFDAMRAQGIQVHVHYFPVHLQPYYQKLGFSVGQFPEAERFYRSILTLP
EEECCCCHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHCC
LYPNLTAEQIGYICDNLRELLI
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILYGKQDINQVDIDAVINVLQSGFLTQGPKVTEFEQAISEYVGANYSVAVNSATSALHI
CEEECCCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHH
ACLALGVVSNDLVWTTPITFVASANCALYCGAEIDFVDVEPATGNMSSSALSAKLLLANA
HHHHHHHHCCCEEEECCEEEEEECCEEEEECCEEEEEECCCCCCCCCCHHHEEEEEEECC
NGRLPKVIIAVHMAGHSCNMQAIAQLAKQYGIKVIEDASHGIGGSYQSKKIGACQYSDIT
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCEE
IFSFHPVKIITTAEGGVATTNSKPIADAMEMYRSHGITKDPALMERPQEGDWYYEQHHLG
EEEECCEEEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCC
FNYRMTDLQAALGVSQLTRINEFVEKRNILAAIYRSQLTDLPINIVEPIEQSYSARHLFI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE
IRLLQPDKRKAIFDAMRAQGIQVHVHYFPVHLQPYYQKLGFSVGQFPEAERFYRSILTLP
EEECCCCHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHCC
LYPNLTAEQIGYICDNLRELLI
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]