| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is recX [H]
Identifier: 120598089
GI number: 120598089
Start: 1440102
End: 1440515
Strand: Direct
Name: recX [H]
Synonym: Sputw3181_1266
Alternate gene names: 120598089
Gene position: 1440102-1440515 (Clockwise)
Preceding gene: 120598088
Following gene: 120598090
Centisome position: 30.59
GC content: 44.44
Gene sequence:
>414_bases TTGCTCGATAAAGGTTTCGAACTAAACGATATAGAACCTGTACTCGATGCTTGCGAATCCTCCGGTTTTATTAATGATGC TCGTTATGCCGAACTGTTGGTGCGAAGCCACATCAGTCGAGGCCACGGTGCAATACGCATCCGCCAAGCAATCGCACAGA AAGGCTTATCTAAAGACTGTATTGAAGCCGCTTTGGTTAATTGTGATTGTGACTGGTTTGAGCTAGCAAAAGATAAAGCC ACCAAAAAATACGGCATTCCCCGTGTGACAGAAGTGAAGGGCTCTAAAGCTCGGGATCTCATCGCAAAGGAAAAGGCCAA ACGAGTGCGTTTTTTAATGGGCCAAGGCTTTAGCTACGATCAAATCAGTTATGCATTAGATTCAGATCCCAATGATCTCG ACGAAGATGATTAA
Upstream 100 bases:
>100_bases ACTTAGAGACAGGCGAAATATTCTGAGTCAGTCCGCATACCAAATCGCGGTAGCGCTGCTAGCGCGCCGCGATTATTCCC GCCAACAAATTCGTGATAAA
Downstream 100 bases:
>100_bases CGCCCTAATTTAAAAGTGATGATTTGAAGCTAAGGCTGTAAACACTCATCTACTTATCACCTACGGGCTTTGAAGCCTTC TGGTTTCTCGTTGTGCTCAC
Product: regulatory protein RecX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MLDKGFELNDIEPVLDACESSGFINDARYAELLVRSHISRGHGAIRIRQAIAQKGLSKDCIEAALVNCDCDWFELAKDKA TKKYGIPRVTEVKGSKARDLIAKEKAKRVRFLMGQGFSYDQISYALDSDPNDLDEDD
Sequences:
>Translated_137_residues MLDKGFELNDIEPVLDACESSGFINDARYAELLVRSHISRGHGAIRIRQAIAQKGLSKDCIEAALVNCDCDWFELAKDKA TKKYGIPRVTEVKGSKARDLIAKEKAKRVRFLMGQGFSYDQISYALDSDPNDLDEDD >Mature_137_residues MLDKGFELNDIEPVLDACESSGFINDARYAELLVRSHISRGHGAIRIRQAIAQKGLSKDCIEAALVNCDCDWFELAKDKA TKKYGIPRVTEVKGSKARDLIAKEKAKRVRFLMGQGFSYDQISYALDSDPNDLDEDD
Specific function: Modulates recA activity [H]
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family [H]
Homologues:
Organism=Escherichia coli, GI1789050, Length=114, Percent_Identity=36.8421052631579, Blast_Score=83, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003783 [H]
Pfam domain/function: PF02631 RecX [H]
EC number: NA
Molecular weight: Translated: 15328; Mature: 15328
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDKGFELNDIEPVLDACESSGFINDARYAELLVRSHISRGHGAIRIRQAIAQKGLSKDC CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH IEAALVNCDCDWFELAKDKATKKYGIPRVTEVKGSKARDLIAKEKAKRVRFLMGQGFSYD HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH QISYALDSDPNDLDEDD HHHHCCCCCCCCCCCCC >Mature Secondary Structure MLDKGFELNDIEPVLDACESSGFINDARYAELLVRSHISRGHGAIRIRQAIAQKGLSKDC CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH IEAALVNCDCDWFELAKDKATKKYGIPRVTEVKGSKARDLIAKEKAKRVRFLMGQGFSYD HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH QISYALDSDPNDLDEDD HHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]