| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yeiJ [C]
Identifier: 120598010
GI number: 120598010
Start: 1336902
End: 1338161
Strand: Direct
Name: yeiJ [C]
Synonym: Sputw3181_1187
Alternate gene names: 120598010
Gene position: 1336902-1338161 (Clockwise)
Preceding gene: 120598009
Following gene: 120598011
Centisome position: 28.39
GC content: 45.0
Gene sequence:
>1260_bases ATGAATATATTGATGAGTTTAGTAGGGGTGGTCACCCTACTTGCGATAGGTTTCCTCCTATCGAATAACAAAAAAGCAAT TAATTTACGTACAGTGGGTGGTGCGTTAGCCATTCAAGCCGCCTTCGGTGGTTTTGTTCTGTATGTTCCCGTAGGTAAAG ATATTCTGAAAAGTGTATCTGACGCCGTATCTAGCGTTATTGGTTATGCACAAAACGGTATTAGCTTCCTGTTTGGCGAT TTAGCTAACTTCAAACTTGGTTTTATTTTCGCTGTTAACGTGTTGCCTGTTATCGTGTTCTTCTCTTCTTTAATCGCGGT ACTGTACTACCTAGGTGTAATGCAGTGGGTCATCCGTATCATCGGTGGCGCGCTACAAAAAGCATTAGGTACAAGCCGTA CTGAGTCTATGTCAGCAACTGCTAACATTTTCGTTGGTCAAACTGAAGCGCCTTTAGTGGTTCGTCCGTTTATTCCTACG ATGACGCAGTCTGAACTGTTTGCGATCATGGTGGGTGGTTTAGCATCAATCGCGGGTTCAGTGTTAGCTGGTTACGCGCA AATGGGCGTGCCTATCGAATACTTAGTTGCCGCTTCATTCATGGCAGCACCAGGTGGCCTATTAATGGCGAAACTGATGC ACCCAGAAACAGAAGCCGCTAAGAACGATATGGATGAATTACCAGAAGATCCTGATAAGCCAGCGAACGTGTTAGACGCT GCGGCTGCGGGTGCTTCATCTGGTATGCATTTAGCGCTGAACGTTGGTGCTATGTTGTTAGCCTTCGTAGGTTTGATCGC GATGATCAACGGTATCATCGGTGGTGTAGGCGGTTGGTTTGGTGTTGAAGGTTTAACACTTGAGCTGATCCTTGGCTACA TTTTCATGCCATTAGCATTCTTAATTGGTGTGCCTTGGAACGAAGCGTTAGTAGCAGGTTCTTTCATCGGTCAAAAGATC GTTGTTAACGAATTCGTCGCTTACTTAAACTTTGCTCCATACTTAAAAGACATCGCTGATGGTGGCCTAGTTGTGGCTGA AACTGGTTTAGCAATGACTGACAGAACCAAAGCGATTATTTCGTTTGCACTGTGTGGTTTCGCTAACTTGTCTTCAATTG CGATTCTACTGGGTGGTTTAGGCGCTATGGCTCCTAACCGTCGCCATGATTTAGCTAAAATGGGTATTCGTGCGGTTATC GCCGGCTCTTTAGCTAACTTAATGAGCGCAACACTTGCTGGCTTATTCTTAGCTATCTAA
Upstream 100 bases:
>100_bases TCAAAACGACGATTTTCGACTTTTCCTCGGGTATAATCTGACGCGGAAATAGGTTGATTAACAACATAATTAAAAAGTGT TAACAATAGGGTGATGGTTA
Downstream 100 bases:
>100_bases TTGTTAGCTATCTAAGTTTAAGGGGATGCGCTCCCCAAAACTGGGTCCAGCCCATTGCTGGACTGGACCCAAGTTAATTC AACCATTTTCCAATAGTGAT
Product: nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVSDAVSSVIGYAQNGISFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWVIRIIGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEAAKNDMDELPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGLVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVI AGSLANLMSATLAGLFLAI
Sequences:
>Translated_419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVSDAVSSVIGYAQNGISFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWVIRIIGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEAAKNDMDELPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGLVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVI AGSLANLMSATLAGLFLAI >Mature_419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVSDAVSSVIGYAQNGISFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWVIRIIGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEAAKNDMDELPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGLVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVI AGSLANLMSATLAGLFLAI
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI227116277, Length=414, Percent_Identity=38.4057971014493, Blast_Score=295, Evalue=4e-80, Organism=Homo sapiens, GI11545853, Length=374, Percent_Identity=41.7112299465241, Blast_Score=295, Evalue=7e-80, Organism=Homo sapiens, GI42542381, Length=414, Percent_Identity=37.6811594202899, Blast_Score=291, Evalue=1e-78, Organism=Escherichia coli, GI1788485, Length=424, Percent_Identity=48.8207547169811, Blast_Score=376, Evalue=1e-105, Organism=Escherichia coli, GI1788488, Length=424, Percent_Identity=49.5283018867925, Blast_Score=363, Evalue=1e-102, Organism=Escherichia coli, GI1788737, Length=410, Percent_Identity=30.2439024390244, Blast_Score=179, Evalue=4e-46, Organism=Caenorhabditis elegans, GI17560276, Length=404, Percent_Identity=30.4455445544554, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI71991794, Length=407, Percent_Identity=30.7125307125307, Blast_Score=208, Evalue=4e-54, Organism=Caenorhabditis elegans, GI25146537, Length=194, Percent_Identity=32.9896907216495, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI45552519, Length=415, Percent_Identity=38.5542168674699, Blast_Score=294, Evalue=6e-80, Organism=Drosophila melanogaster, GI45552517, Length=415, Percent_Identity=38.5542168674699, Blast_Score=294, Evalue=6e-80, Organism=Drosophila melanogaster, GI19921868, Length=415, Percent_Identity=38.5542168674699, Blast_Score=294, Evalue=6e-80, Organism=Drosophila melanogaster, GI281360430, Length=411, Percent_Identity=37.2262773722628, Blast_Score=266, Evalue=1e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43499; Mature: 43499
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHH DAVSSVIGYAQNGISFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWVIRI HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HHHHHHHHHCCCCHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEAAKNDMDELPEDPDKPANVLDA HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCHHHCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGLVVAETGLAMTDRTKAII HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVIAGSLANLMSATLAGLFLAI HHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHH DAVSSVIGYAQNGISFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWVIRI HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HHHHHHHHHCCCCHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEAAKNDMDELPEDPDKPANVLDA HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCHHHCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGLVVAETGLAMTDRTKAII HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVIAGSLANLMSATLAGLFLAI HHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]