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The map label for this gene is ompK [H]

Identifier: 120598011

GI number: 120598011

Start: 1338521

End: 1339378

Strand: Direct

Name: ompK [H]

Synonym: Sputw3181_1188

Alternate gene names: 120598011

Gene position: 1338521-1339378 (Clockwise)

Preceding gene: 120598010

Following gene: 120598012

Centisome position: 28.43

GC content: 42.54

Gene sequence:

>858_bases
ATGAAAAACGTTAAAACTTTAGCTTTAGCCGCTACCGCAGTAGCAGCAATCTCTGGTAACGCATTTGCCGCAGACCGTAC
AGACCTTCACGGCTCTGATTACAAGTGGATGCAGTTCAACGCTATGTACTCTATCGGTGAAAAACCAGAGAACCCAGCGT
CTGGCGATCAGCACAACTACTTAGAAATGGAGTTTGGTGGTCGTTCTGGTATTTTCGATCTTTATGGTTATGTTGATATT
TTCAACTTAGCGAATGAAAAAACTAGTAATGGCGACAAGAACCCAGGTTCTAAAACTAGTAAGCTATTTATGAAGTTTGC
CCCACGTGTATCTATTGATGCATTAACAGGTAAAGATTTGTCTTTCGGCCCAGTACAAGAAGTTTACTTCTCTACTCTAT
TCAACTGGGACGGCCTAAACGGTGAAGGCGTTAACTCCACATTCTGGGGTGTTGGTGCCGATGTAAACGTACCTTGGTTA
GGCAAAACTGGTATGAACCTATACGGTTACTACGATATGAACGCTAAAGAATGGAACGGTTACCAATTCTCTGCGAACTG
GTTCAAGCCTTTCTATTTCTTCGATGATAAGAGCTTCCTATCATTCCAAGGTTATATCGATTACCAATTCGGTGCAGACG
AAGCTTATTGGCCTGCAGTTGAAAATGGTCCATTAGTTAAAGGCAAGTCAACTAACGGTGGTAACATTTTCTTCGGTCTA
TACTGGCACTCAGAACGTTATGCTCTGGGCTATGGCCTAAAAGGCTTTAAAGATGTTTACTTGCTGACCGATGATGGTGC
TACTGGTCTAGAATCAACAGGTTGGTCACACTACCTGTCTGCAACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
ACGCTAGATTATTGAGATTTTTTTTAATCGAGGTAAAATGCGAGCGCCACAAAAAGAACGCTACCCTTGATGGTAGTAAA
CAAGATAAATGGGGTTGATG

Downstream 100 bases:

>100_bases
TATCTTGTAAGACTTGTTGGAGCCGCATTTTGCGGCTCCATATTTAATGTGTCATGAATCTTTATCTAAACCCATTAAAT
GTTTGAGCAGTGTGTTTATA

Product: nucleoside-specific channel-forming protein, Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPENPASGDQHNYLEMEFGGRSGIFDLYGYVDI
FNLANEKTSNGDKNPGSKTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDDKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNIFFGL
YWHSERYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF

Sequences:

>Translated_285_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPENPASGDQHNYLEMEFGGRSGIFDLYGYVDI
FNLANEKTSNGDKNPGSKTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDDKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNIFFGL
YWHSERYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
>Mature_285_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPENPASGDQHNYLEMEFGGRSGIFDLYGYVDI
FNLANEKTSNGDKNPGSKTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDDKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNIFFGL
YWHSERYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=246, Percent_Identity=32.1138211382114, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 31833; Mature: 31833

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPENPASGDQHNY
CCCCHHHHHHHHHHHEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDIFNLANEKTSNGDKNPGSKTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHEEEHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
SFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDDKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNIFFGL
EEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEE
YWHSERYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
EECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPENPASGDQHNY
CCCCHHHHHHHHHHHEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDIFNLANEKTSNGDKNPGSKTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHEEEHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
SFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDDKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNIFFGL
EEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEE
YWHSERYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
EECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]