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The map label for this gene is radC [C]

Identifier: 120597983

GI number: 120597983

Start: 1310780

End: 1311277

Strand: Direct

Name: radC [C]

Synonym: Sputw3181_1160

Alternate gene names: 120597983

Gene position: 1310780-1311277 (Clockwise)

Preceding gene: 120597982

Following gene: 120597984

Centisome position: 27.84

GC content: 46.99

Gene sequence:

>498_bases
ATGAAAAACAAAAAGTTCTTAGCTGGCGAAGAAACCGGTACTTACATCGTTCCTGAGCAAGTGACTGAAGCGGATATCTT
AGATATGGCGCTCAAGCTTGCCCGTGGTCGATTGAGTAAAGGTCGAAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAAGTCTTTGGCGTGCTGTTTCTTGATACAAAGCATCGCGTTATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCAGCGAGCGTGTATCCAAGGGAAGTAACAAAGCGAGCGCTAGAACTTAATGT
AGCAGCAGTGATATTGGTTCATAACCATCCATCGGGTGATCCTGAACCCAGTGAATCTGATAAACGCATCACTCATCGAC
TTCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTCGTGGTCGCATCCGAGGGCTGCGTTTCGCTTGCC
GAACGCGGTTATCTGTAA

Upstream 100 bases:

>100_bases
AACTGTTAATTCAGTAACCACATCAACTTTACCACCCTGCGGGGACGATTCCGTCCCCGTCAGGGCATGGGTTCGTCTCC
GCTTTTTTTTGGAGACTCCT

Downstream 100 bases:

>100_bases
TGAATGGGCGTATTGCCCATTCTCCTACATCACAAAAGCAGTCCCATCAGCACACATCAGCACAGCTCGAATTTCTATTT
GAGTTTGATGATGCCCCTGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKNKKFLAGEETGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNVAAVILVHNHPSGDPEPSESDKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Sequences:

>Translated_165_residues
MKNKKFLAGEETGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNVAAVILVHNHPSGDPEPSESDKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL
>Mature_165_residues
MKNKKFLAGEETGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNVAAVILVHNHPSGDPEPSESDKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=140, Percent_Identity=40.7142857142857, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI2367100, Length=172, Percent_Identity=41.2790697674419, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1788997, Length=117, Percent_Identity=49.5726495726496, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1788312, Length=131, Percent_Identity=45.8015267175573, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18589; Mature: 18589

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKFLAGEETGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHE
CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
YEHEVFGVLFLDTKHRVIRFEELFKGTLDAASVYPREVTKRALELNVAAVILVHNHPSGD
HHHHHEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCEEEEEEEECCCCCC
PEPSESDKRITHRLRDALSLVDIRTLDHVVVASEGCVSLAERGYL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MKNKKFLAGEETGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHE
CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
YEHEVFGVLFLDTKHRVIRFEELFKGTLDAASVYPREVTKRALELNVAAVILVHNHPSGD
HHHHHEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCEEEEEEEECCCCCC
PEPSESDKRITHRLRDALSLVDIRTLDHVVVASEGCVSLAERGYL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]