| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120597982
Identifier: 120597982
GI number: 120597982
Start: 1309041
End: 1310696
Strand: Direct
Name: 120597982
Synonym: Sputw3181_1159
Alternate gene names: NA
Gene position: 1309041-1310696 (Clockwise)
Preceding gene: 120597981
Following gene: 120597983
Centisome position: 27.8
GC content: 48.97
Gene sequence:
>1656_bases ATGAATCATCCATTAAAAAACGCACTGCCAATCGTTGCCGCCGCTTATGGCGAAAAGTTTGGTGTGAAGGTGCTTATTCA AGGACAAGATGCGTTTACCGATGGTGAGCGGATTGTGATCCCAACAGCAAACCCAGACGACCCACACTATCAACAGATAG CTTGGGGTTATCTGGCTCATGAAGCGGCGCATATTCGGCATACCAATTTTGACATGGTGCAGAAGGCGTCGTCCAAGCCG ATCCGTAAGGCACTTCTCAATATCATTGAGGACGTTCGCATTGAAAACGAATTGGCAAAGGATTACCCCGGAACCCGGCG CAGTATTTCGCAAGTGATTGAGTACATGGTGGACACACAGCAAATGAGTGTACCTGAACAGCTTGATCCTGCATCTAACT TGCAAGCCTGGTTGTTGTTCCGCTTGAGATGCCATTTTCTGGGTCAGAAAGCGCTGACACCTCTGTATCAAGCGGTTGAT GAAAGAGTGAGACAACTCTTTCCTGCCGCAGCGATGAGCCGGTTAAGCGCCATGCTTACAGCAGTGCCTAGCCTGGCATC TACAGGTGAAGTGCTAAAACTTGTCGATGCCATCGTTGCCATGTTGGAAGACGAATCTCGTCCACCACAGGATGAGTCGG ATGCTGATAGCGGTAATGACATTGGACAAGATGCGAGTAATGACAGCAATAACAGTAGTGACAGTCAAATCCCTGAAACA GACTCGTCTGCAACGGCGGATGTTGCTGAAACGGGGGATTCAGATAACTCTGATCAAGCTGACAATTTGCGACAAGCCTT AGAGGCCAGTGCCGCTCAGTTTGAACCCGATACCTTTGCCCAAGTGGCAGAAGTGTTGTCGGAACAAGCTGAAGGACATC AGGGCGTCACACCTCTCAGTTTGCCCCAAGCAGAGCAAGCTATGTTGGGTGATGAGGCCATCTTGACCTTATCGGCGTCT GAGTCGGCTCAAATTCGAGCCCGACTTAGGGGCATGGTTCAGTCCAGTCAGGATAATCGGAATCATGCCAAACGGCACGG TCTTCGAGTTGCAACTCATCGTCTTGCCGCTTCACAAGCAGGTGAGTCGAGATTGTTTATTCAAAGGCAACCTCGCATTG CGCCCAATGCTGCTGTGCACTTGCTTGTCGATATATCGGGCTCAATGGGTAAGCCCATTGGCGAAGGTAATCGAAAGTAC TTTCATGTTGCCAATGAAGCTGCTTTGGCTTTGGCCATGGCACTGGAAGGCATACCGGGTGTTGTACCTGCGGTCAGTTA TTTTCCTGGTATTCATCAGGAAGTTTCTATCGCGTTATTGCCCAAGCAATCGGTTCGACATCGGGCCGCCTGTTTTGACC AAAAACCACGAGGTTGTACGCCTATGGCACAAGCGATGTGGTTTGCGGCAAACAGTTTGTTAGCGCAAAAACAGAAGCGA AAGCTAATGATAGTGCTAACGGATGGTGACCCAGATGATTGGGCTGCCACGCATGACATTGTTGACCGGTGCAGACGAAG TGGCTTTGAGCTTCTGGGAATAGGGATTCAAACACGCAGTGTTGAGAAATTCTTTCCTCAAAGCATTGTGATTAACGATG TCAAAGATCTGAAGCGTGAGTTATTCGAAGTAACACAACAACTGTTAATTCAGTAA
Upstream 100 bases:
>100_bases CGACCTGGATAAGCTAAAAGCACAGGTTTAAACATCCATATTCCCAGCGGGGAAACGCTCCCGCTGAGGGAGTATTCCCC CTAATGATTAGGAGACTCCC
Downstream 100 bases:
>100_bases CCACATCAACTTTACCACCCTGCGGGGACGATTCCGTCCCCGTCAGGGCATGGGTTCGTCTCCGCTTTTTTTTGGAGACT CCTATGAAAAACAAAAAGTT
Product: von Willebrand factor, type A
Products: NA
Alternate protein names: Plasmid-Related Protein
Number of amino acids: Translated: 551; Mature: 551
Protein sequence:
>551_residues MNHPLKNALPIVAAAYGEKFGVKVLIQGQDAFTDGERIVIPTANPDDPHYQQIAWGYLAHEAAHIRHTNFDMVQKASSKP IRKALLNIIEDVRIENELAKDYPGTRRSISQVIEYMVDTQQMSVPEQLDPASNLQAWLLFRLRCHFLGQKALTPLYQAVD ERVRQLFPAAAMSRLSAMLTAVPSLASTGEVLKLVDAIVAMLEDESRPPQDESDADSGNDIGQDASNDSNNSSDSQIPET DSSATADVAETGDSDNSDQADNLRQALEASAAQFEPDTFAQVAEVLSEQAEGHQGVTPLSLPQAEQAMLGDEAILTLSAS ESAQIRARLRGMVQSSQDNRNHAKRHGLRVATHRLAASQAGESRLFIQRQPRIAPNAAVHLLVDISGSMGKPIGEGNRKY FHVANEAALALAMALEGIPGVVPAVSYFPGIHQEVSIALLPKQSVRHRAACFDQKPRGCTPMAQAMWFAANSLLAQKQKR KLMIVLTDGDPDDWAATHDIVDRCRRSGFELLGIGIQTRSVEKFFPQSIVINDVKDLKRELFEVTQQLLIQ
Sequences:
>Translated_551_residues MNHPLKNALPIVAAAYGEKFGVKVLIQGQDAFTDGERIVIPTANPDDPHYQQIAWGYLAHEAAHIRHTNFDMVQKASSKP IRKALLNIIEDVRIENELAKDYPGTRRSISQVIEYMVDTQQMSVPEQLDPASNLQAWLLFRLRCHFLGQKALTPLYQAVD ERVRQLFPAAAMSRLSAMLTAVPSLASTGEVLKLVDAIVAMLEDESRPPQDESDADSGNDIGQDASNDSNNSSDSQIPET DSSATADVAETGDSDNSDQADNLRQALEASAAQFEPDTFAQVAEVLSEQAEGHQGVTPLSLPQAEQAMLGDEAILTLSAS ESAQIRARLRGMVQSSQDNRNHAKRHGLRVATHRLAASQAGESRLFIQRQPRIAPNAAVHLLVDISGSMGKPIGEGNRKY FHVANEAALALAMALEGIPGVVPAVSYFPGIHQEVSIALLPKQSVRHRAACFDQKPRGCTPMAQAMWFAANSLLAQKQKR KLMIVLTDGDPDDWAATHDIVDRCRRSGFELLGIGIQTRSVEKFFPQSIVINDVKDLKRELFEVTQQLLIQ >Mature_551_residues MNHPLKNALPIVAAAYGEKFGVKVLIQGQDAFTDGERIVIPTANPDDPHYQQIAWGYLAHEAAHIRHTNFDMVQKASSKP IRKALLNIIEDVRIENELAKDYPGTRRSISQVIEYMVDTQQMSVPEQLDPASNLQAWLLFRLRCHFLGQKALTPLYQAVD ERVRQLFPAAAMSRLSAMLTAVPSLASTGEVLKLVDAIVAMLEDESRPPQDESDADSGNDIGQDASNDSNNSSDSQIPET DSSATADVAETGDSDNSDQADNLRQALEASAAQFEPDTFAQVAEVLSEQAEGHQGVTPLSLPQAEQAMLGDEAILTLSAS ESAQIRARLRGMVQSSQDNRNHAKRHGLRVATHRLAASQAGESRLFIQRQPRIAPNAAVHLLVDISGSMGKPIGEGNRKY FHVANEAALALAMALEGIPGVVPAVSYFPGIHQEVSIALLPKQSVRHRAACFDQKPRGCTPMAQAMWFAANSLLAQKQKR KLMIVLTDGDPDDWAATHDIVDRCRRSGFELLGIGIQTRSVEKFFPQSIVINDVKDLKRELFEVTQQLLIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60352; Mature: 60352
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHPLKNALPIVAAAYGEKFGVKVLIQGQDAFTDGERIVIPTANPDDPHYQQIAWGYLAH CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH EAAHIRHTNFDMVQKASSKPIRKALLNIIEDVRIENELAKDYPGTRRSISQVIEYMVDTQ HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QMSVPEQLDPASNLQAWLLFRLRCHFLGQKALTPLYQAVDERVRQLFPAAAMSRLSAMLT HHCCCHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVPSLASTGEVLKLVDAIVAMLEDESRPPQDESDADSGNDIGQDASNDSNNSSDSQIPET HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSSATADVAETGDSDNSDQADNLRQALEASAAQFEPDTFAQVAEVLSEQAEGHQGVTPLS CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC LPQAEQAMLGDEAILTLSASESAQIRARLRGMVQSSQDNRNHAKRHGLRVATHRLAASQA CCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC GESRLFIQRQPRIAPNAAVHLLVDISGSMGKPIGEGNRKYFHVANEAALALAMALEGIPG CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC VVPAVSYFPGIHQEVSIALLPKQSVRHRAACFDQKPRGCTPMAQAMWFAANSLLAQKQKR HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC KLMIVLTDGDPDDWAATHDIVDRCRRSGFELLGIGIQTRSVEKFFPQSIVINDVKDLKRE CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHH LFEVTQQLLIQ HHHHHHHHHCC >Mature Secondary Structure MNHPLKNALPIVAAAYGEKFGVKVLIQGQDAFTDGERIVIPTANPDDPHYQQIAWGYLAH CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH EAAHIRHTNFDMVQKASSKPIRKALLNIIEDVRIENELAKDYPGTRRSISQVIEYMVDTQ HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QMSVPEQLDPASNLQAWLLFRLRCHFLGQKALTPLYQAVDERVRQLFPAAAMSRLSAMLT HHCCCHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVPSLASTGEVLKLVDAIVAMLEDESRPPQDESDADSGNDIGQDASNDSNNSSDSQIPET HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSSATADVAETGDSDNSDQADNLRQALEASAAQFEPDTFAQVAEVLSEQAEGHQGVTPLS CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC LPQAEQAMLGDEAILTLSASESAQIRARLRGMVQSSQDNRNHAKRHGLRVATHRLAASQA CCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC GESRLFIQRQPRIAPNAAVHLLVDISGSMGKPIGEGNRKYFHVANEAALALAMALEGIPG CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC VVPAVSYFPGIHQEVSIALLPKQSVRHRAACFDQKPRGCTPMAQAMWFAANSLLAQKQKR HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC KLMIVLTDGDPDDWAATHDIVDRCRRSGFELLGIGIQTRSVEKFFPQSIVINDVKDLKRE CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHH LFEVTQQLLIQ HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA