| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597981
Identifier: 120597981
GI number: 120597981
Start: 1308531
End: 1308971
Strand: Direct
Name: 120597981
Synonym: Sputw3181_1158
Alternate gene names: NA
Gene position: 1308531-1308971 (Clockwise)
Preceding gene: 120597980
Following gene: 120597982
Centisome position: 27.79
GC content: 46.71
Gene sequence:
>441_bases ATGCAATCAAGCATCCATAACCCCAGCCAACTGAACCAGTTTGAAGCACATTTTCGTGGTGTGACTGATGCGGTTGAAAG TGAATCGATACCAGAAGTGGCGTGTTGTCGAACGTTAGTACAACGGTCGTACTCAACACATAGTGTCGTGATCCCCAAGA ATCCTGTTTTGATCGCAGATGTGGACGCACAAGGAGCTTGGGTAACGGCCATGGTATTTGTTCCAAACATGGCATTGCAG CAAACCGCTTTTGAGCGGGCCTGGCTGCAATATCAACACGAGGTGTCTACTCAGTTACAAGATCAGTACGGTCTGACATT GGATGACATCCTGAGTTTAGACCAGCTTAAAACGTCATTTGAGCAGCACGAGAGTCCAGCTCAATTGGTGGCTTGGTTAG GTCAAAAATACGACCTGGATAAGCTAAAAGCACAGGTTTAA
Upstream 100 bases:
>100_bases AACATTGGTTCGACTGTACCAAACTCATTTTATTTCTAACGTCCTTGAGGGCATGTTGCCCTTAAGGGCGCATGTCCTCT GAACTATGTAAGAGGAAATT
Downstream 100 bases:
>100_bases ACATCCATATTCCCAGCGGGGAAACGCTCCCGCTGAGGGAGTATTCCCCCTAATGATTAGGAGACTCCCATGAATCATCC ATTAAAAAACGCACTGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 146
Protein sequence:
>146_residues MQSSIHNPSQLNQFEAHFRGVTDAVESESIPEVACCRTLVQRSYSTHSVVIPKNPVLIADVDAQGAWVTAMVFVPNMALQ QTAFERAWLQYQHEVSTQLQDQYGLTLDDILSLDQLKTSFEQHESPAQLVAWLGQKYDLDKLKAQV
Sequences:
>Translated_146_residues MQSSIHNPSQLNQFEAHFRGVTDAVESESIPEVACCRTLVQRSYSTHSVVIPKNPVLIADVDAQGAWVTAMVFVPNMALQ QTAFERAWLQYQHEVSTQLQDQYGLTLDDILSLDQLKTSFEQHESPAQLVAWLGQKYDLDKLKAQV >Mature_146_residues MQSSIHNPSQLNQFEAHFRGVTDAVESESIPEVACCRTLVQRSYSTHSVVIPKNPVLIADVDAQGAWVTAMVFVPNMALQ QTAFERAWLQYQHEVSTQLQDQYGLTLDDILSLDQLKTSFEQHESPAQLVAWLGQKYDLDKLKAQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16460; Mature: 16460
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSSIHNPSQLNQFEAHFRGVTDAVESESIPEVACCRTLVQRSYSTHSVVIPKNPVLIAD CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEE VDAQGAWVTAMVFVPNMALQQTAFERAWLQYQHEVSTQLQDQYGLTLDDILSLDQLKTSF CCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH EQHESPAQLVAWLGQKYDLDKLKAQV HHCCCHHHHHHHHCCCCCHHHHHHCC >Mature Secondary Structure MQSSIHNPSQLNQFEAHFRGVTDAVESESIPEVACCRTLVQRSYSTHSVVIPKNPVLIAD CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEE VDAQGAWVTAMVFVPNMALQQTAFERAWLQYQHEVSTQLQDQYGLTLDDILSLDQLKTSF CCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH EQHESPAQLVAWLGQKYDLDKLKAQV HHCCCHHHHHHHHCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA