| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597977
Identifier: 120597977
GI number: 120597977
Start: 1304464
End: 1305480
Strand: Direct
Name: 120597977
Synonym: Sputw3181_1154
Alternate gene names: NA
Gene position: 1304464-1305480 (Clockwise)
Preceding gene: 120597976
Following gene: 120597978
Centisome position: 27.71
GC content: 47.79
Gene sequence:
>1017_bases ATGAAGGTTATCGACCTATCACAACGTACTCCTGCATGGCACCAGTGGCGCATTGCAGGGGTTACGGCATCTGAAGCCCC AATTATTATGGGGCGTTCACCCTACAAAACACCTTGGCGATTATGGGCAGAAAAAACCGGATTCGTATTACCGGAAGACC TGTCAAATAATCCTAATGTGCTTCGCGGTATACGGTTGGAGCCTCAAGCAAGGCGAGCATTTGAGAATGCGCATAATGAC TTTCTTCTGCCGTTATGTGCTGAAGCTGATCATAACGCAATCTTTCGAGCCAGCTTTGATGGCATCAACGATGCGGGCGA ACCCGTTGAACTGAAATGTCCTTGCCAGTCAGTTTTTGAGGATGTGCAAGCTCACAGAGAACAAAGCGAGGCGTACCAGT TGTATTGGGTGCAAGTACAGCATCAAATACTGGTCGCCAATAGCACGCGTGGTTGGTTGGTATTCTATTTTGAGGATCAA CTGATTGAGTTTGAAATACAACGAGACGCGGCGTTCTTAACTGAATTGCAAGAAACAGCGCTTCAGTTTTGGGAGTTAGT ACAGACCAAAAAAGAACCGTCAAAATGCCCTGAACAAGATTGTTTTGTTCCCAAGGGTGAAGCCCAATACCGCTGGACAT CGCTGTCTCGGCAGTATTGCTCAGCACATTCCGAAGTTGTCCGACTGGAAAATCACATTAAATCTTTGAAAGAGGAAATG CGAGACGCCCAGTCAAAATTGGTCGCCATGATGGGTAACTACGCTCATGCCGACTATGCTGGGGTCAAACTCAGCCGCTA CATGATGGCGGGCACGGTGGACTATAAGCAATTGGCCACCGATAAGTTAGGCGAGCTGGATGAACAGGTTTTAGCCGCTT ACCGAAAAGCGCCACAAGAGCGGTTGCGCATTAGCACCAATAAGCCAGAGCAGCCCGTTGAAACACCAATCAAAATCAGT CTTGAGCAAGATAACTTGGTTCTGCCAGGTGACTCGCCGAGCTCATTTTACTTTTAA
Upstream 100 bases:
>100_bases TGTTCAGCACCAAACAGCGTTAGCGCAAGCTGCAAAGTAACCACTTAACCCTGAAGGGGAGTTCTCTCCTTCGGGGGAGT CTCCCCTCAAAGGAGGCAAT
Downstream 100 bases:
>100_bases CGTTCACTTGGAGCCGATTTCGGCTCCTTTCTCATGCGCTTACATCGAGTGCATCAGAAAGCAGTTTCACTCGTAGCCAA TGCTGGGTACGAATGATAGA
Product: endonuclease-like phage-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MKVIDLSQRTPAWHQWRIAGVTASEAPIIMGRSPYKTPWRLWAEKTGFVLPEDLSNNPNVLRGIRLEPQARRAFENAHND FLLPLCAEADHNAIFRASFDGINDAGEPVELKCPCQSVFEDVQAHREQSEAYQLYWVQVQHQILVANSTRGWLVFYFEDQ LIEFEIQRDAAFLTELQETALQFWELVQTKKEPSKCPEQDCFVPKGEAQYRWTSLSRQYCSAHSEVVRLENHIKSLKEEM RDAQSKLVAMMGNYAHADYAGVKLSRYMMAGTVDYKQLATDKLGELDEQVLAAYRKAPQERLRISTNKPEQPVETPIKIS LEQDNLVLPGDSPSSFYF
Sequences:
>Translated_338_residues MKVIDLSQRTPAWHQWRIAGVTASEAPIIMGRSPYKTPWRLWAEKTGFVLPEDLSNNPNVLRGIRLEPQARRAFENAHND FLLPLCAEADHNAIFRASFDGINDAGEPVELKCPCQSVFEDVQAHREQSEAYQLYWVQVQHQILVANSTRGWLVFYFEDQ LIEFEIQRDAAFLTELQETALQFWELVQTKKEPSKCPEQDCFVPKGEAQYRWTSLSRQYCSAHSEVVRLENHIKSLKEEM RDAQSKLVAMMGNYAHADYAGVKLSRYMMAGTVDYKQLATDKLGELDEQVLAAYRKAPQERLRISTNKPEQPVETPIKIS LEQDNLVLPGDSPSSFYF >Mature_338_residues MKVIDLSQRTPAWHQWRIAGVTASEAPIIMGRSPYKTPWRLWAEKTGFVLPEDLSNNPNVLRGIRLEPQARRAFENAHND FLLPLCAEADHNAIFRASFDGINDAGEPVELKCPCQSVFEDVQAHREQSEAYQLYWVQVQHQILVANSTRGWLVFYFEDQ LIEFEIQRDAAFLTELQETALQFWELVQTKKEPSKCPEQDCFVPKGEAQYRWTSLSRQYCSAHSEVVRLENHIKSLKEEM RDAQSKLVAMMGNYAHADYAGVKLSRYMMAGTVDYKQLATDKLGELDEQVLAAYRKAPQERLRISTNKPEQPVETPIKIS LEQDNLVLPGDSPSSFYF
Specific function: Unknown
COG id: COG5377
COG function: function code L; Phage-related protein, predicted endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38845; Mature: 38845
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVIDLSQRTPAWHQWRIAGVTASEAPIIMGRSPYKTPWRLWAEKTGFVLPEDLSNNPNV CCEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCE LRGIRLEPQARRAFENAHNDFLLPLCAEADHNAIFRASFDGINDAGEPVELKCPCQSVFE EEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHH DVQAHREQSEAYQLYWVQVQHQILVANSTRGWLVFYFEDQLIEFEIQRDAAFLTELQETA HHHHHHHHCCCEEEEEEEEEEEEEEEECCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHH LQFWELVQTKKEPSKCPEQDCFVPKGEAQYRWTSLSRQYCSAHSEVVRLENHIKSLKEEM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDAQSKLVAMMGNYAHADYAGVKLSRYMMAGTVDYKQLATDKLGELDEQVLAAYRKAPQE HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH RLRISTNKPEQPVETPIKISLEQDNLVLPGDSPSSFYF HEEECCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCC >Mature Secondary Structure MKVIDLSQRTPAWHQWRIAGVTASEAPIIMGRSPYKTPWRLWAEKTGFVLPEDLSNNPNV CCEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCE LRGIRLEPQARRAFENAHNDFLLPLCAEADHNAIFRASFDGINDAGEPVELKCPCQSVFE EEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHH DVQAHREQSEAYQLYWVQVQHQILVANSTRGWLVFYFEDQLIEFEIQRDAAFLTELQETA HHHHHHHHCCCEEEEEEEEEEEEEEEECCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHH LQFWELVQTKKEPSKCPEQDCFVPKGEAQYRWTSLSRQYCSAHSEVVRLENHIKSLKEEM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDAQSKLVAMMGNYAHADYAGVKLSRYMMAGTVDYKQLATDKLGELDEQVLAAYRKAPQE HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH RLRISTNKPEQPVETPIKISLEQDNLVLPGDSPSSFYF HEEECCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA