| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597976
Identifier: 120597976
GI number: 120597976
Start: 1303359
End: 1304177
Strand: Direct
Name: 120597976
Synonym: Sputw3181_1153
Alternate gene names: NA
Gene position: 1303359-1304177 (Clockwise)
Preceding gene: 120597975
Following gene: 120597977
Centisome position: 27.68
GC content: 46.89
Gene sequence:
>819_bases ATGGAAAAACCAAAGCTAATCCAACGCTTTGCTGAGCGCTTTAGTGTCGATCCAAACAAGTTGTTCGATACTCTAAAAGC AACAGCATTTAAGCAACGTGACGGTAGTGCACCGACCAATGAGCAGATGATGGCGCTCTTAGTGGTTGCAGATCAGTACG GCTTGAACCCTTTCACCAAAGAGATTTTTGCGTTCCCTGATAAACAAGCTGGGATTATTCCAGTGGTAGGTGTCGATGGA TGGTCTCGCATCATTAATCAACACGACCAGTTTGATGGCATGGAGTTTAAGACTTCAGAAAACAAAGTCTCCCTGGATGG CGCGAAAGAATGCCCTGAATGGATGGAATGCATCATCTATCGGCGCGACCGTTCGCACCCAGTCAAAATCACTGAGTATC TGGATGAAGTCTATCGACCGCCTTTTGAAGGTAACGGCAAAAATGGCCCTTACCGTGTAGATGGTCCATGGCAGACGCAC ACTAAGCGAATGCTAAGACATAAATCCATGATCCAGTGTTCCCGCATTGCGTTTGGCTTTGTGGGAATTTTCGATCAAGA CGAAGCAGAGCGAATTATCGAAGGCCAAGCAACACACGTTGTTGAGCCATCGGTGATTCCACCCGAGCAAGTTGATGATC GAACCCGAGGGCTTGTTTGCAAGCTTATCGAGCGGGCGGAAGCTTCAAACGCTTGGAATAGTGCATTGGAATATGCCAAT GAACATTTTCAGGGTGTTGAACTGACGTTTGCGAAACAAGAAATATTTAATGCACAGCAACAGGCAGCCAAAGCGCTCAC ACAGCCTTTAGCTTCTTAG
Upstream 100 bases:
>100_bases TATCCTGAACCAGATTTTTAACCGAGCGATAACGCTTTAACCCAGCCGGGAGTACTTTCCCGTCAGGGGCAGACTCCCAC TTTGATTGTCGGAGTCCAAA
Downstream 100 bases:
>100_bases CGCCACGCATTCATTTTACTAACCCTGGCGGGATTTTTCTCCCGTCAGGGGGAAGGTCTCGTCTTTTTTTTGGAGATCTT CCATGACTAAATCAGCCTCA
Product: phage recombination protein Bet
Products: NA
Alternate protein names: Phage Recombination Protein Bet; Recombination Protein Bet; Bacteriophage Recombinase; Phage Recombination Protein
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MEKPKLIQRFAERFSVDPNKLFDTLKATAFKQRDGSAPTNEQMMALLVVADQYGLNPFTKEIFAFPDKQAGIIPVVGVDG WSRIINQHDQFDGMEFKTSENKVSLDGAKECPEWMECIIYRRDRSHPVKITEYLDEVYRPPFEGNGKNGPYRVDGPWQTH TKRMLRHKSMIQCSRIAFGFVGIFDQDEAERIIEGQATHVVEPSVIPPEQVDDRTRGLVCKLIERAEASNAWNSALEYAN EHFQGVELTFAKQEIFNAQQQAAKALTQPLAS
Sequences:
>Translated_272_residues MEKPKLIQRFAERFSVDPNKLFDTLKATAFKQRDGSAPTNEQMMALLVVADQYGLNPFTKEIFAFPDKQAGIIPVVGVDG WSRIINQHDQFDGMEFKTSENKVSLDGAKECPEWMECIIYRRDRSHPVKITEYLDEVYRPPFEGNGKNGPYRVDGPWQTH TKRMLRHKSMIQCSRIAFGFVGIFDQDEAERIIEGQATHVVEPSVIPPEQVDDRTRGLVCKLIERAEASNAWNSALEYAN EHFQGVELTFAKQEIFNAQQQAAKALTQPLAS >Mature_272_residues MEKPKLIQRFAERFSVDPNKLFDTLKATAFKQRDGSAPTNEQMMALLVVADQYGLNPFTKEIFAFPDKQAGIIPVVGVDG WSRIINQHDQFDGMEFKTSENKVSLDGAKECPEWMECIIYRRDRSHPVKITEYLDEVYRPPFEGNGKNGPYRVDGPWQTH TKRMLRHKSMIQCSRIAFGFVGIFDQDEAERIIEGQATHVVEPSVIPPEQVDDRTRGLVCKLIERAEASNAWNSALEYAN EHFQGVELTFAKQEIFNAQQQAAKALTQPLAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30967; Mature: 30967
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKPKLIQRFAERFSVDPNKLFDTLKATAFKQRDGSAPTNEQMMALLVVADQYGLNPFTK CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEHHEEHHHHCCCHHHH EIFAFPDKQAGIIPVVGVDGWSRIINQHDQFDGMEFKTSENKVSLDGAKECPEWMECIIY HHHCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEECCCCEEECCCHHCCHHHHHHHHH RRDRSHPVKITEYLDEVYRPPFEGNGKNGPYRVDGPWQTHTKRMLRHKSMIQCSRIAFGF HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH VGIFDQDEAERIIEGQATHVVEPSVIPPEQVDDRTRGLVCKLIERAEASNAWNSALEYAN HCCCCCHHHHHHHCCCCCEEECCCCCCCHHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHH EHFQGVELTFAKQEIFNAQQQAAKALTQPLAS HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEKPKLIQRFAERFSVDPNKLFDTLKATAFKQRDGSAPTNEQMMALLVVADQYGLNPFTK CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEHHEEHHHHCCCHHHH EIFAFPDKQAGIIPVVGVDGWSRIINQHDQFDGMEFKTSENKVSLDGAKECPEWMECIIY HHHCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEECCCCEEECCCHHCCHHHHHHHHH RRDRSHPVKITEYLDEVYRPPFEGNGKNGPYRVDGPWQTHTKRMLRHKSMIQCSRIAFGF HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH VGIFDQDEAERIIEGQATHVVEPSVIPPEQVDDRTRGLVCKLIERAEASNAWNSALEYAN HCCCCCHHHHHHHCCCCCEEECCCCCCCHHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHH EHFQGVELTFAKQEIFNAQQQAAKALTQPLAS HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA