| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597970
Identifier: 120597970
GI number: 120597970
Start: 1297895
End: 1300168
Strand: Direct
Name: 120597970
Synonym: Sputw3181_1147
Alternate gene names: NA
Gene position: 1297895-1300168 (Clockwise)
Preceding gene: 120597969
Following gene: 120597971
Centisome position: 27.57
GC content: 37.64
Gene sequence:
>2274_bases ATGAAACACGATGAACTAAATGAGCGTTTAAGAACTTTCTTAATTTCAAGCCGAGAAAATGCGGGTTTGTCCCAAAGTGA TGTTGCTGCAAGATCTGAGGTTTTTGGAATTGGAAGAACACTGGATCAACGGGCTGTTTCAAGAATTGAAAGTCAACCAA TGAATGCTGATGCAATTAAGATTGCTGGGTATTTATCAGCTGTTGGGATTCAGCCAAGCAAGTATTATGAAATTTTAACG GAATACACTTATAAAGAGGATGATTACATTATGTCAGAAGTTGGTGAGCAAACTATCAAAATTAAGGTAGAGGCAGCGAA GTCGCTTATTTCATCAGTGAAAGATAGTATCGATTGCTACAATCATGAATATATCGATTCAATAGGGCTTAAAAGTAAGG TTGAACAGCTTGAGGCTGTAGTAGATGGACTTAATAGAAAGCCTGTAATTGGATGTTTTGGTCATTTTGATGCAGGTAAG TCAACACTGATTAACACTGTTATCAATCAGTCATTGCTCCCGACCAAATACCAACCAGCAACATGTGTTGTTAATCTTCT TATGCACGAATCAGATAAGCCTGAAACAATTTCAGGAAATGTGGCTGTGTTTAAGAAGGGCTTTAAGCCGCATATGGTTC ATTCACCAGTTGATGTCGAAAAATATTTAATTGAACAAGGTGGTTCAGAAATATTGGATAGATTAGGAGTACACAATCAT GAAGATGATGTATTAAATGAGGCTTATATCGCAATTGTTTTTTCAGATTCCGAGATACTTCGTTCGGTTTGGTTGTTGGA TACCCCAGGGGATCTTAACGGTTCAGATGAGTCTGATACTGAGAAGGCTCTCGGTGGTGTAGAACTTGCTGATGGTGTTG TTTTTGTTTCAAATCATACCGGGTTTTTCAAAGATAGTGATTTAGGGTTTGCATCAAATATCATCAGGCAGAGACCACCA GTGGATAAGGAGAAACCACTTGATCATTTAATGTTCATTCAGTCTCATTGTCACTCTGAAATAAGCAGGGATGATGTGGA AGCTGTAGGTCGTGTAACCTTCAAGAGAATTAAAAAGCAACTAGATAATTTAATATTTTCATCATGGATGGAAGATGGAT TTATTACGCAATTACCAGAAAGTTCAGAACTAACAGCACGAGTTCAACCATTTTGGCGTGAAAATAATGACTATCGTAGT GATACATTGCGAAAAATCACCGAAATGGCTTCGTCTCTAACTTTGAACCAAGAATCAATAGTAGATAAGTATATTTCTAA TATTCTAAAGAATATCGAAAATATGCTATTGAGTGAGATTGAAAATCTAAAAAACAAGAAATCGGAGACTTTCGAAAGAA TTAAGGAGGTCAACGAGAAGGATGCGCGATTTCGTGAGTTGTCTACTCAGTTGATAAAAGATTTTAACTCTCTCATTGAA TCATGTAATAGCCACAAAAAACACGACTTGGATGTTATTAGTACCTATTACAAATACAACACTTCTGTTGAAGGTCTCGA AGAGCTTATCAATGACACCTATTCGGACAAGAAAGAGGCTCAATCTGAGTTAGGCAATTATATTGGTCAGCTTTTGACTA CAAAATTAGAAAGCACATTAAAGACTAGTGGTAAAGCCGTATCGACGGAATTAGATTCTTTGTTGCTGAGATGGCAGGAA GCTGCCCCCACAATCTCAACTACAGGAATTGATACCCAAATATCTGGATTGGGTGCAGAGTTTAGTGCATTTAACTCGAG AGCGGCTTTTGTTGGAGGTCTTGCGGGATTAGGAAGTCTTGGAGCTATGGCATTATATGTATCGACTATAGCAAGTAATT TAGGTGCATATATTTTAGTTGGAAAGGCAGCTGGAGTATTGGTGTCTTTAGGGTTGGTTGGAAGTGTTACTACAGTAACT TCATTCGTTGCAGCCATCGGTGGTCCTATTACCATAGGTATTGCTCTTGCTGCGGCAATTGGTTACATAATATATCGACT AGCTGGTGGTAGTTGGCAAAAATCACTCGCAAAAAAAGCCGCAGAAGCAATTCGTAAAGAGTCGGTGTTTGATGACATAG AGAAAGCTGTAACTGAGTATTGGAATAGTACATCTAAGGCAATCAAAGCTGGTTTGGATGAGCTAATCATCAAAACTGAT GAATATATTGAAAATTTAAAGGCTGATGCGAAAGTTGAATATGATATTGATGAAGTTGATGTATGTGTCTCACTTATCGA TGACACGTTATTAATTCTTAAGTCTAGCGACTAA
Upstream 100 bases:
>100_bases TGGAATGGTTGCCGGACTTGCAATTACTGCGGCAGCTCCATTGGCGATTGGTGCTGGAACTTACGGTATATACAAGTGGC TGAAATCATAGGTCTGAAAA
Downstream 100 bases:
>100_bases CTCTTGATGGGAGGTATTTATGGCTTGGTGGTTCGCTGCTCCTCTTGTTATATGGGGGGCAAAAAAAATATATGATGCTG TTACTGAAGATGATGAGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix Containing Protein; Plasmid-Related Membrane Protein
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MKHDELNERLRTFLISSRENAGLSQSDVAARSEVFGIGRTLDQRAVSRIESQPMNADAIKIAGYLSAVGIQPSKYYEILT EYTYKEDDYIMSEVGEQTIKIKVEAAKSLISSVKDSIDCYNHEYIDSIGLKSKVEQLEAVVDGLNRKPVIGCFGHFDAGK STLINTVINQSLLPTKYQPATCVVNLLMHESDKPETISGNVAVFKKGFKPHMVHSPVDVEKYLIEQGGSEILDRLGVHNH EDDVLNEAYIAIVFSDSEILRSVWLLDTPGDLNGSDESDTEKALGGVELADGVVFVSNHTGFFKDSDLGFASNIIRQRPP VDKEKPLDHLMFIQSHCHSEISRDDVEAVGRVTFKRIKKQLDNLIFSSWMEDGFITQLPESSELTARVQPFWRENNDYRS DTLRKITEMASSLTLNQESIVDKYISNILKNIENMLLSEIENLKNKKSETFERIKEVNEKDARFRELSTQLIKDFNSLIE SCNSHKKHDLDVISTYYKYNTSVEGLEELINDTYSDKKEAQSELGNYIGQLLTTKLESTLKTSGKAVSTELDSLLLRWQE AAPTISTTGIDTQISGLGAEFSAFNSRAAFVGGLAGLGSLGAMALYVSTIASNLGAYILVGKAAGVLVSLGLVGSVTTVT SFVAAIGGPITIGIALAAAIGYIIYRLAGGSWQKSLAKKAAEAIRKESVFDDIEKAVTEYWNSTSKAIKAGLDELIIKTD EYIENLKADAKVEYDIDEVDVCVSLIDDTLLILKSSD
Sequences:
>Translated_757_residues MKHDELNERLRTFLISSRENAGLSQSDVAARSEVFGIGRTLDQRAVSRIESQPMNADAIKIAGYLSAVGIQPSKYYEILT EYTYKEDDYIMSEVGEQTIKIKVEAAKSLISSVKDSIDCYNHEYIDSIGLKSKVEQLEAVVDGLNRKPVIGCFGHFDAGK STLINTVINQSLLPTKYQPATCVVNLLMHESDKPETISGNVAVFKKGFKPHMVHSPVDVEKYLIEQGGSEILDRLGVHNH EDDVLNEAYIAIVFSDSEILRSVWLLDTPGDLNGSDESDTEKALGGVELADGVVFVSNHTGFFKDSDLGFASNIIRQRPP VDKEKPLDHLMFIQSHCHSEISRDDVEAVGRVTFKRIKKQLDNLIFSSWMEDGFITQLPESSELTARVQPFWRENNDYRS DTLRKITEMASSLTLNQESIVDKYISNILKNIENMLLSEIENLKNKKSETFERIKEVNEKDARFRELSTQLIKDFNSLIE SCNSHKKHDLDVISTYYKYNTSVEGLEELINDTYSDKKEAQSELGNYIGQLLTTKLESTLKTSGKAVSTELDSLLLRWQE AAPTISTTGIDTQISGLGAEFSAFNSRAAFVGGLAGLGSLGAMALYVSTIASNLGAYILVGKAAGVLVSLGLVGSVTTVT SFVAAIGGPITIGIALAAAIGYIIYRLAGGSWQKSLAKKAAEAIRKESVFDDIEKAVTEYWNSTSKAIKAGLDELIIKTD EYIENLKADAKVEYDIDEVDVCVSLIDDTLLILKSSD >Mature_757_residues MKHDELNERLRTFLISSRENAGLSQSDVAARSEVFGIGRTLDQRAVSRIESQPMNADAIKIAGYLSAVGIQPSKYYEILT EYTYKEDDYIMSEVGEQTIKIKVEAAKSLISSVKDSIDCYNHEYIDSIGLKSKVEQLEAVVDGLNRKPVIGCFGHFDAGK STLINTVINQSLLPTKYQPATCVVNLLMHESDKPETISGNVAVFKKGFKPHMVHSPVDVEKYLIEQGGSEILDRLGVHNH EDDVLNEAYIAIVFSDSEILRSVWLLDTPGDLNGSDESDTEKALGGVELADGVVFVSNHTGFFKDSDLGFASNIIRQRPP VDKEKPLDHLMFIQSHCHSEISRDDVEAVGRVTFKRIKKQLDNLIFSSWMEDGFITQLPESSELTARVQPFWRENNDYRS DTLRKITEMASSLTLNQESIVDKYISNILKNIENMLLSEIENLKNKKSETFERIKEVNEKDARFRELSTQLIKDFNSLIE SCNSHKKHDLDVISTYYKYNTSVEGLEELINDTYSDKKEAQSELGNYIGQLLTTKLESTLKTSGKAVSTELDSLLLRWQE AAPTISTTGIDTQISGLGAEFSAFNSRAAFVGGLAGLGSLGAMALYVSTIASNLGAYILVGKAAGVLVSLGLVGSVTTVT SFVAAIGGPITIGIALAAAIGYIIYRLAGGSWQKSLAKKAAEAIRKESVFDDIEKAVTEYWNSTSKAIKAGLDELIIKTD EYIENLKADAKVEYDIDEVDVCVSLIDDTLLILKSSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83546; Mature: 83546
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHDELNERLRTFLISSRENAGLSQSDVAARSEVFGIGRTLDQRAVSRIESQPMNADAIK CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHH IAGYLSAVGIQPSKYYEILTEYTYKEDDYIMSEVGEQTIKIKVEAAKSLISSVKDSIDCY HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHC NHEYIDSIGLKSKVEQLEAVVDGLNRKPVIGCFGHFDAGKSTLINTVINQSLLPTKYQPA CHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCH TCVVNLLMHESDKPETISGNVAVFKKGFKPHMVHSPVDVEKYLIEQGGSEILDRLGVHNH HHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCC EDDVLNEAYIAIVFSDSEILRSVWLLDTPGDLNGSDESDTEKALGGVELADGVVFVSNHT CHHHHCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCC GFFKDSDLGFASNIIRQRPPVDKEKPLDHLMFIQSHCHSEISRDDVEAVGRVTFKRIKKQ CCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LDNLIFSSWMEDGFITQLPESSELTARVQPFWRENNDYRSDTLRKITEMASSLTLNQESI HHHHHHHHHHCCCCEECCCCCCCCHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH VDKYISNILKNIENMLLSEIENLKNKKSETFERIKEVNEKDARFRELSTQLIKDFNSLIE HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SCNSHKKHDLDVISTYYKYNTSVEGLEELINDTYSDKKEAQSELGNYIGQLLTTKLESTL HHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KTSGKAVSTELDSLLLRWQEAAPTISTTGIDTQISGLGAEFSAFNSRAAFVGGLAGLGSL HHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHH GAMALYVSTIASNLGAYILVGKAAGVLVSLGLVGSVTTVTSFVAAIGGPITIGIALAAAI HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GYIIYRLAGGSWQKSLAKKAAEAIRKESVFDDIEKAVTEYWNSTSKAIKAGLDELIIKTD HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EYIENLKADAKVEYDIDEVDVCVSLIDDTLLILKSSD HHHHHCCCCCEEECCHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure MKHDELNERLRTFLISSRENAGLSQSDVAARSEVFGIGRTLDQRAVSRIESQPMNADAIK CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHH IAGYLSAVGIQPSKYYEILTEYTYKEDDYIMSEVGEQTIKIKVEAAKSLISSVKDSIDCY HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHC NHEYIDSIGLKSKVEQLEAVVDGLNRKPVIGCFGHFDAGKSTLINTVINQSLLPTKYQPA CHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCH TCVVNLLMHESDKPETISGNVAVFKKGFKPHMVHSPVDVEKYLIEQGGSEILDRLGVHNH HHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCC EDDVLNEAYIAIVFSDSEILRSVWLLDTPGDLNGSDESDTEKALGGVELADGVVFVSNHT CHHHHCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCC GFFKDSDLGFASNIIRQRPPVDKEKPLDHLMFIQSHCHSEISRDDVEAVGRVTFKRIKKQ CCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LDNLIFSSWMEDGFITQLPESSELTARVQPFWRENNDYRSDTLRKITEMASSLTLNQESI HHHHHHHHHHCCCCEECCCCCCCCHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH VDKYISNILKNIENMLLSEIENLKNKKSETFERIKEVNEKDARFRELSTQLIKDFNSLIE HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SCNSHKKHDLDVISTYYKYNTSVEGLEELINDTYSDKKEAQSELGNYIGQLLTTKLESTL HHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH KTSGKAVSTELDSLLLRWQEAAPTISTTGIDTQISGLGAEFSAFNSRAAFVGGLAGLGSL HHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHH GAMALYVSTIASNLGAYILVGKAAGVLVSLGLVGSVTTVTSFVAAIGGPITIGIALAAAI HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GYIIYRLAGGSWQKSLAKKAAEAIRKESVFDDIEKAVTEYWNSTSKAIKAGLDELIIKTD HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EYIENLKADAKVEYDIDEVDVCVSLIDDTLLILKSSD HHHHHCCCCCEEECCHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA