| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597971
Identifier: 120597971
GI number: 120597971
Start: 1300188
End: 1300706
Strand: Direct
Name: 120597971
Synonym: Sputw3181_1148
Alternate gene names: NA
Gene position: 1300188-1300706 (Clockwise)
Preceding gene: 120597970
Following gene: 120597974
Centisome position: 27.61
GC content: 38.73
Gene sequence:
>519_bases ATGGCTTGGTGGTTCGCTGCTCCTCTTGTTATATGGGGGGCAAAAAAAATATATGATGCTGTTACTGAAGATGATGAGCC ATCATATAGCTCAAGTTCAAGTAGTACACTATCTTCTGCGAAGTCTACTCGTACAAAGTTAAGGAAAAAACTCATACGAG AAGCAATACTTGAGAATAGGAAGTCGCTAATATCAAAGGCTTTTAGCGATAGAGAGTCTGAACTTGTTAAGTTGGATGGC TCAAGTAAAGCCGATGCGATCTTAGACGTTTCCGGTTTTAATGCGGCTTTAGGTAATTTGTCTAGCACTGTAAGGTTGTT AAATCCTACTTATAGTGAGAGTTTTGAGGAAGTTGATGGTTCGTTGTTGGTTTTCACAGATTTAAACTCGGAGGTCAACA ATGTTGCAAAAAAAGCTGACGATGAATATGGTTCAATGGCGGGCATTGATCACTACAATGAATACGATAGATCCATAGAT CCATTCATAGCTAAGTTGCAAAGTGAGATTTCAAGATAA
Upstream 100 bases:
>100_bases GTTGAATATGATATTGATGAAGTTGATGTATGTGTCTCACTTATCGATGACACGTTATTAATTCTTAAGTCTAGCGACTA ACTCTTGATGGGAGGTATTT
Downstream 100 bases:
>100_bases ATACAGTTTAATTAGTGGGATCTAAAATAGGGGCATACTGCCCCTATTATTTTATTATCTATTTTATATGGTGGTTTTTA TTGCCTTGTAAGGCTTTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MAWWFAAPLVIWGAKKIYDAVTEDDEPSYSSSSSSTLSSAKSTRTKLRKKLIREAILENRKSLISKAFSDRESELVKLDG SSKADAILDVSGFNAALGNLSSTVRLLNPTYSESFEEVDGSLLVFTDLNSEVNNVAKKADDEYGSMAGIDHYNEYDRSID PFIAKLQSEISR
Sequences:
>Translated_172_residues MAWWFAAPLVIWGAKKIYDAVTEDDEPSYSSSSSSTLSSAKSTRTKLRKKLIREAILENRKSLISKAFSDRESELVKLDG SSKADAILDVSGFNAALGNLSSTVRLLNPTYSESFEEVDGSLLVFTDLNSEVNNVAKKADDEYGSMAGIDHYNEYDRSID PFIAKLQSEISR >Mature_171_residues AWWFAAPLVIWGAKKIYDAVTEDDEPSYSSSSSSTLSSAKSTRTKLRKKLIREAILENRKSLISKAFSDRESELVKLDGS SKADAILDVSGFNAALGNLSSTVRLLNPTYSESFEEVDGSLLVFTDLNSEVNNVAKKADDEYGSMAGIDHYNEYDRSIDP FIAKLQSEISR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19016; Mature: 18885
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWWFAAPLVIWGAKKIYDAVTEDDEPSYSSSSSSTLSSAKSTRTKLRKKLIREAILENR CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLISKAFSDRESELVKLDGSSKADAILDVSGFNAALGNLSSTVRLLNPTYSESFEEVDG HHHHHHHHHCCHHHEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC SLLVFTDLNSEVNNVAKKADDEYGSMAGIDHYNEYDRSIDPFIAKLQSEISR CEEEEECCCHHHHHHHHHHCHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure AWWFAAPLVIWGAKKIYDAVTEDDEPSYSSSSSSTLSSAKSTRTKLRKKLIREAILENR CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLISKAFSDRESELVKLDGSSKADAILDVSGFNAALGNLSSTVRLLNPTYSESFEEVDG HHHHHHHHHCCHHHEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC SLLVFTDLNSEVNNVAKKADDEYGSMAGIDHYNEYDRSIDPFIAKLQSEISR CEEEEECCCHHHHHHHHHHCHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA