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The map label for this gene is traB [H]

Identifier: 120597937

GI number: 120597937

Start: 1256017

End: 1257306

Strand: Direct

Name: traB [H]

Synonym: Sputw3181_1107

Alternate gene names: 120597937

Gene position: 1256017-1257306 (Clockwise)

Preceding gene: 120597936

Following gene: 120597938

Centisome position: 26.68

GC content: 51.09

Gene sequence:

>1290_bases
ATGAAAGCACAATGGGAGCAATTGAGCCCGAACATGAAGCGGGGCCTATCGGTTGCAGGTATTGCTGGTGGTCTCATCCT
TATGGTGATGGTGTTTTCACCTAATCCTGACGATGGCGCGAACAGTCGGAACCGGCAGGAAACGATCCGGCACATTCTTA
CGGATACCAATACTCGTGATGTTGGGGTCGATAGTTTGGCTGCGAACGTAAAACTACTCAGTGAGCGCAATGAACAGTTA
CGTCGTGAAGTTGAGCGCTTGCGTCGTGACGTCGATTCAGGACGGCTAAGCCCAGGTTCGCCTTCTATACCAAGTGAGGT
CAATGCGGAGTTGGTTCGCCTTCGAGCGGAACTTAATGATGTTCGCGCTGGAGGTGATGCAGCAGTTGAAGGCACAAATA
GCCGTTTTGAAGTGCCTTTATCTGCCATGGAATTGCCTAAAGACGAAAAGCCACTGCCGTCTAACCCAGACGACTATTTT
GCCAATGCGCCGCTGCCAGATCCGCTCTATCGGCAGCCAGCCAGTGGCCAAGGTTCACGAGCACGGGATGTTCCATTGCC
GCCAATCACGATTCGTATGATTGAGCCTGAAGTGGTTGCTGAACCAGAGGTTGTTGTGCAAGAAGCGCCGCCTTTGTATT
TACCGGCGGGCAGCATCATCTCAGGTACTTTGATCACAGGTTTGGATGCACCTACTCACGAGTCCGCAAGACGCGAACCT
TTTCCTGCATTGCTGAGGATTCAAAAGGAAGCCATTTTACCCAACCGATTTAGAGCGGATATCAAAGAGTGTTTCTTGAT
CGCCGCAGGTTACGGTGATTTGAGCTCTGAGCGTGCTTATTTGCGAGGCGAGACCATTTCATGTGTGAGAGAAGACGGTG
GCGTCATTGAAACACGACTGGATTCTTATGCTGTAGGTGAAGACGGCAAAGCCGGCATTCGTGGCCGATTGGTGTCGAAA
CAAGGCCAGCTGGTGGCCAAGTCGATGATGGCCGGATTCCTTCAGGGCTTGGCTGGCGCATTTGATGTAAATCCTGTTCC
GACGATTCAGACGGGTAATGCCGGTGATACTCAGCTGTACCAGCAAGTCATGAGCCAAGAAGCATTACAAGGCGCTGCGA
TTAAAGGCACAGGTAAAGCATTGGATAGAGTGGCCAAGTTCTATTTGGACATGGCTGAAAATATGTTCCCAGTCATAGAG
GTAGACGCTGCAAGGAAAATTGAAGTCATAGTCACTCGTGGTGCCTCGTTGTCGTTGGCCACTTCTCAAGGGGGTGGTGC
AAGAAGATGA

Upstream 100 bases:

>100_bases
TGCCGGGCGAAAAGACTGAGTTGTATGTGGTTGTTCGCAATCATCGTGAAGAAGCGGTGGAAAGTCAGCGACCTTCGCTT
CTTGTAGGAGGTGAATAACG

Downstream 100 bases:

>100_bases
AAAAATCCTGCATGTTGCTAACCGATCGAAGTCCGTTTCAGACAATAAGATGTGTATCCAGAGGAGAGTTAACCATGACG
ACATCAATGCAGAACAACCC

Product: TraB pilus assembly family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MKAQWEQLSPNMKRGLSVAGIAGGLILMVMVFSPNPDDGANSRNRQETIRHILTDTNTRDVGVDSLAANVKLLSERNEQL
RREVERLRRDVDSGRLSPGSPSIPSEVNAELVRLRAELNDVRAGGDAAVEGTNSRFEVPLSAMELPKDEKPLPSNPDDYF
ANAPLPDPLYRQPASGQGSRARDVPLPPITIRMIEPEVVAEPEVVVQEAPPLYLPAGSIISGTLITGLDAPTHESARREP
FPALLRIQKEAILPNRFRADIKECFLIAAGYGDLSSERAYLRGETISCVREDGGVIETRLDSYAVGEDGKAGIRGRLVSK
QGQLVAKSMMAGFLQGLAGAFDVNPVPTIQTGNAGDTQLYQQVMSQEALQGAAIKGTGKALDRVAKFYLDMAENMFPVIE
VDAARKIEVIVTRGASLSLATSQGGGARR

Sequences:

>Translated_429_residues
MKAQWEQLSPNMKRGLSVAGIAGGLILMVMVFSPNPDDGANSRNRQETIRHILTDTNTRDVGVDSLAANVKLLSERNEQL
RREVERLRRDVDSGRLSPGSPSIPSEVNAELVRLRAELNDVRAGGDAAVEGTNSRFEVPLSAMELPKDEKPLPSNPDDYF
ANAPLPDPLYRQPASGQGSRARDVPLPPITIRMIEPEVVAEPEVVVQEAPPLYLPAGSIISGTLITGLDAPTHESARREP
FPALLRIQKEAILPNRFRADIKECFLIAAGYGDLSSERAYLRGETISCVREDGGVIETRLDSYAVGEDGKAGIRGRLVSK
QGQLVAKSMMAGFLQGLAGAFDVNPVPTIQTGNAGDTQLYQQVMSQEALQGAAIKGTGKALDRVAKFYLDMAENMFPVIE
VDAARKIEVIVTRGASLSLATSQGGGARR
>Mature_429_residues
MKAQWEQLSPNMKRGLSVAGIAGGLILMVMVFSPNPDDGANSRNRQETIRHILTDTNTRDVGVDSLAANVKLLSERNEQL
RREVERLRRDVDSGRLSPGSPSIPSEVNAELVRLRAELNDVRAGGDAAVEGTNSRFEVPLSAMELPKDEKPLPSNPDDYF
ANAPLPDPLYRQPASGQGSRARDVPLPPITIRMIEPEVVAEPEVVVQEAPPLYLPAGSIISGTLITGLDAPTHESARREP
FPALLRIQKEAILPNRFRADIKECFLIAAGYGDLSSERAYLRGETISCVREDGGVIETRLDSYAVGEDGKAGIRGRLVSK
QGQLVAKSMMAGFLQGLAGAFDVNPVPTIQTGNAGDTQLYQQVMSQEALQGAAIKGTGKALDRVAKFYLDMAENMFPVIE
VDAARKIEVIVTRGASLSLATSQGGGARR

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 46273; Mature: 46273

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAQWEQLSPNMKRGLSVAGIAGGLILMVMVFSPNPDDGANSRNRQETIRHILTDTNTRD
CCCCHHHCCCHHHHCCCHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
VGVDSLAANVKLLSERNEQLRREVERLRRDVDSGRLSPGSPSIPSEVNAELVRLRAELND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VRAGGDAAVEGTNSRFEVPLSAMELPKDEKPLPSNPDDYFANAPLPDPLYRQPASGQGSR
HCCCCCCEECCCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
ARDVPLPPITIRMIEPEVVAEPEVVVQEAPPLYLPAGSIISGTLITGLDAPTHESARREP
CCCCCCCCEEEEEECCHHHCCCCCEEECCCCCEECCCCHHCCHHEECCCCCCCCHHCCCC
FPALLRIQKEAILPNRFRADIKECFLIAAGYGDLSSERAYLRGETISCVREDGGVIETRL
CHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHCCCCEEEECCCCCEEEECC
DSYAVGEDGKAGIRGRLVSKQGQLVAKSMMAGFLQGLAGAFDVNPVPTIQTGNAGDTQLY
CCEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHH
QQVMSQEALQGAAIKGTGKALDRVAKFYLDMAENMFPVIEVDAARKIEVIVTRGASLSLA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCEEEEE
TSQGGGARR
ECCCCCCCC
>Mature Secondary Structure
MKAQWEQLSPNMKRGLSVAGIAGGLILMVMVFSPNPDDGANSRNRQETIRHILTDTNTRD
CCCCHHHCCCHHHHCCCHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
VGVDSLAANVKLLSERNEQLRREVERLRRDVDSGRLSPGSPSIPSEVNAELVRLRAELND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VRAGGDAAVEGTNSRFEVPLSAMELPKDEKPLPSNPDDYFANAPLPDPLYRQPASGQGSR
HCCCCCCEECCCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
ARDVPLPPITIRMIEPEVVAEPEVVVQEAPPLYLPAGSIISGTLITGLDAPTHESARREP
CCCCCCCCEEEEEECCHHHCCCCCEEECCCCCEECCCCHHCCHHEECCCCCCCCHHCCCC
FPALLRIQKEAILPNRFRADIKECFLIAAGYGDLSSERAYLRGETISCVREDGGVIETRL
CHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHCCCCEEEECCCCCEEEECC
DSYAVGEDGKAGIRGRLVSKQGQLVAKSMMAGFLQGLAGAFDVNPVPTIQTGNAGDTQLY
CCEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHH
QQVMSQEALQGAAIKGTGKALDRVAKFYLDMAENMFPVIEVDAARKIEVIVTRGASLSLA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCEEEEE
TSQGGGARR
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]