| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597938
Identifier: 120597938
GI number: 120597938
Start: 1257303
End: 1257953
Strand: Direct
Name: 120597938
Synonym: Sputw3181_1108
Alternate gene names: NA
Gene position: 1257303-1257953 (Clockwise)
Preceding gene: 120597937
Following gene: 120597939
Centisome position: 26.7
GC content: 48.54
Gene sequence:
>651_bases ATGAAAAAATCCTGCATGTTGCTAACCGATCGAAGTCCGTTTCAGACAATAAGATGTGTATCCAGAGGAGAGTTAACCAT GACGACATCAATGCAGAACAACCCAAAGCACCAGTCAAAACAGTGGTCTAAAGCTGGATTACTTTTATTGGCAGTCGGCT CAACCTTATTGTCTGGCTGTAGTTCATTGGGTCTTGGGAGTAGTGAATATGGATGCCCAGGTATGCCTGACGGTGTGCGC TGTTTATCTGCTCGTGAAGTCTATGAGCTTACCAGTTATGGCGCTGCACCCAAGACGATTGATGCTGTGGCGACTCGAAT TGGTTCTCCCTCTGGGTATTCACAATCTGATTTAGAGACAGGACTGCTGAGCCATCCAGCATTACCCGAGACGCAGCAAT CTGCACCTATTCGCATTCCTTCAAGGGTAATGCGGATTTGGATTGCGCCTTGGGAGGATGACCGTGGAGATCTGAATTTA TCCAGCTACGTGTTTACCGAAATTGAACCGCGCCGGTGGGATATTGGGGTGTCAGCACCTCGAACGGTTTCGCCAGTGCT ACGTCCACTTCAGACTCAAAGCGATTCAGCCTCAGCGGGAGCTGATGGTAAGCGCGATAACTTGAGTATCTACGGAGAAA CTAACGAATGA
Upstream 100 bases:
>100_bases TCCCAGTCATAGAGGTAGACGCTGCAAGGAAAATTGAAGTCATAGTCACTCGTGGTGCCTCGTTGTCGTTGGCCACTTCT CAAGGGGGTGGTGCAAGAAG
Downstream 100 bases:
>100_bases CAAATGCAGTTCGCAGCATTCAGACTCAGCGCCTAATGACCATTGGTGCGCTTGGTTTAATGGCGTTAATGATTTCGGAG CCCTCATTTGCAGGCACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Pilus Biogenesis Protein; Pilus Assembly Protein; Sex Pilus Assembly Protein; Plasmid-Related Protein; Membrane Lipoprotein Lipid Attachment Site
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE
Sequences:
>Translated_216_residues MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE >Mature_216_residues MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23397; Mature: 23397
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGC CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCEEEEHHHHHHHHHH SSLGLGSSEYGCPGMPDGVRCLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLET HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH GLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRWDIGVSAP HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCC RTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC >Mature Secondary Structure MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGC CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCEEEEHHHHHHHHHH SSLGLGSSEYGCPGMPDGVRCLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLET HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH GLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRWDIGVSAP HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCC RTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA