| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597927
Identifier: 120597927
GI number: 120597927
Start: 1247282
End: 1247995
Strand: Direct
Name: 120597927
Synonym: Sputw3181_1097
Alternate gene names: NA
Gene position: 1247282-1247995 (Clockwise)
Preceding gene: 120597926
Following gene: 120597928
Centisome position: 26.49
GC content: 43.42
Gene sequence:
>714_bases ATGAAGCACTGGAAGGCTGTAGGCCTAGAGGCTTTTCTCTCGGCCTATCCGAACATTAGATTGGTAGATGTCCATGCAGA TAAGGTTGAGTTGCAGGGAGAGTATCTGTTAAAAGCACAGCTAGCTGGAAGTCGGTTTATAGAGCGAACATTTTCTCTAA GGATTATATGCCCAAGTAATTATCCTAGGGCTTTACCAGTGGTGTTTGATACCGCTGGTTACTTTCCTCGTAATCAGGAC TTCCATACTTACTCTGATGGATCATTTTGTCTTGGCTCAGACCTGAAAATTAAGTCAATTTTGAAAACCGACTCGTCATT GACAACCTTTTTCGAAAAGATTGTTGTCAGGTTTCTTTATTCGGTGTCCCATAGGGTTGAATTTGGCAACTTTCCCTATG GCGAACTGGACCATGGTGAGAAAGGCCTGATTGATGATTATTCTCAGTTGTTCAATGTCAATGGTAAAGCATCAGTTCTA CGGGCACTGAAAGCGTTAGGTTTGCGCAAGCGTGAGGCAAATAAATTACCGTGTCCATGTGGTTGTGGTGATCGTCTTGG CTCGTGTGACTATCGGTTTGTCTTGAACGAGTTTCGCCAAGTTGAGCGACGCCGATGGTTTCGCGATCACCTACAAGAAG CTTTTACACCGATTGAAAAACCCAAAAGGAGAGTTGGAAAAAAAACTAAAAGGCCAAGTAGAAATACGCCTTAG
Upstream 100 bases:
>100_bases TTCAAGTTCGGTAGCACGTCTCTTGGGGATTCCTGCGGTGACAGCAAAACCAACTTTCGCAATTCAATCATCTGATCCAA AGCCATGGTTTAAGCAATAG
Downstream 100 bases:
>100_bases CTTGATAAGCTCTCTCGGGCATTTTATGGCATATGTGTTAATACATATCGGATTTTTGAGTCTAATGAACCGGCAACAGC AGATTGAACCTTCACACTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MKHWKAVGLEAFLSAYPNIRLVDVHADKVELQGEYLLKAQLAGSRFIERTFSLRIICPSNYPRALPVVFDTAGYFPRNQD FHTYSDGSFCLGSDLKIKSILKTDSSLTTFFEKIVVRFLYSVSHRVEFGNFPYGELDHGEKGLIDDYSQLFNVNGKASVL RALKALGLRKREANKLPCPCGCGDRLGSCDYRFVLNEFRQVERRRWFRDHLQEAFTPIEKPKRRVGKKTKRPSRNTP
Sequences:
>Translated_237_residues MKHWKAVGLEAFLSAYPNIRLVDVHADKVELQGEYLLKAQLAGSRFIERTFSLRIICPSNYPRALPVVFDTAGYFPRNQD FHTYSDGSFCLGSDLKIKSILKTDSSLTTFFEKIVVRFLYSVSHRVEFGNFPYGELDHGEKGLIDDYSQLFNVNGKASVL RALKALGLRKREANKLPCPCGCGDRLGSCDYRFVLNEFRQVERRRWFRDHLQEAFTPIEKPKRRVGKKTKRPSRNTP >Mature_237_residues MKHWKAVGLEAFLSAYPNIRLVDVHADKVELQGEYLLKAQLAGSRFIERTFSLRIICPSNYPRALPVVFDTAGYFPRNQD FHTYSDGSFCLGSDLKIKSILKTDSSLTTFFEKIVVRFLYSVSHRVEFGNFPYGELDHGEKGLIDDYSQLFNVNGKASVL RALKALGLRKREANKLPCPCGCGDRLGSCDYRFVLNEFRQVERRRWFRDHLQEAFTPIEKPKRRVGKKTKRPSRNTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27288; Mature: 27288
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHWKAVGLEAFLSAYPNIRLVDVHADKVELQGEYLLKAQLAGSRFIERTFSLRIICPSN CCCHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHEEEEEECCCC YPRALPVVFDTAGYFPRNQDFHTYSDGSFCLGSDLKIKSILKTDSSLTTFFEKIVVRFLY CCCCCCEEEECCCCCCCCCCCCEECCCCEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHH SVSHRVEFGNFPYGELDHGEKGLIDDYSQLFNVNGKASVLRALKALGLRKREANKLPCPC HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCCCC GCGDRLGSCDYRFVLNEFRQVERRRWFRDHLQEAFTPIEKPKRRVGKKTKRPSRNTP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHCCCCCCCC >Mature Secondary Structure MKHWKAVGLEAFLSAYPNIRLVDVHADKVELQGEYLLKAQLAGSRFIERTFSLRIICPSN CCCHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHEEEEEECCCC YPRALPVVFDTAGYFPRNQDFHTYSDGSFCLGSDLKIKSILKTDSSLTTFFEKIVVRFLY CCCCCCEEEECCCCCCCCCCCCEECCCCEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHH SVSHRVEFGNFPYGELDHGEKGLIDDYSQLFNVNGKASVLRALKALGLRKREANKLPCPC HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCCCC GCGDRLGSCDYRFVLNEFRQVERRRWFRDHLQEAFTPIEKPKRRVGKKTKRPSRNTP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA