| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597911
Identifier: 120597911
GI number: 120597911
Start: 1229186
End: 1229629
Strand: Direct
Name: 120597911
Synonym: Sputw3181_1081
Alternate gene names: NA
Gene position: 1229186-1229629 (Clockwise)
Preceding gene: 120597906
Following gene: 120597914
Centisome position: 26.11
GC content: 45.5
Gene sequence:
>444_bases TTGGGTGAGGAAATTGGTTTGGTAGAAATCGTCAATGAACAATGGAAAGCAGAGGTATCAGATTTACTTCAGCAAGAAAC GGACAGGCTAAAAGCACTGGCAAGAGCTGAAGTTGATGACTTTTGGGTTACCCATTACAAGGTTCGAGAGAATGAGCCCT TTAAAGATTGGGGCCTGCTTGGTGTCCGTATCAGAGACTTTAAGTATGGCTTTGGCATAGAGTGGTACATCAACAGTTTT CACGGTCAACGAGGCAAGCGCGTGGTCTTTAGTAAGGGACTGCGTATTTCAAAGACGAAGCTGAGATACGCATTTTTGGA CTGCCAAGGTCTAGCCAAAGAATGGGAGTTAGCGCTGGCCATGGAGAAAGAAGAATTCTTCAGTGATGTTCGACGCCAAG TAGATAAGCTCAACATGCTGCGTCGCAGAGTGAATGCCTATTGA
Upstream 100 bases:
>100_bases ATTTATATCGAGACGCCAAACAGTGATTGTGACGGTAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTG GTTTTGGCTTTTGGGGTTAA
Downstream 100 bases:
>100_bases GTTAACTGCGCTACTTCACTCTCGGCAACTGGTCCCAGCGTGTTGTGTAGGCGGGAGACAAATGCTCTCGCTTCATCGAC CAATCTTTCTTCGTACCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MGEEIGLVEIVNEQWKAEVSDLLQQETDRLKALARAEVDDFWVTHYKVRENEPFKDWGLLGVRIRDFKYGFGIEWYINSF HGQRGKRVVFSKGLRISKTKLRYAFLDCQGLAKEWELALAMEKEEFFSDVRRQVDKLNMLRRRVNAY
Sequences:
>Translated_147_residues MGEEIGLVEIVNEQWKAEVSDLLQQETDRLKALARAEVDDFWVTHYKVRENEPFKDWGLLGVRIRDFKYGFGIEWYINSF HGQRGKRVVFSKGLRISKTKLRYAFLDCQGLAKEWELALAMEKEEFFSDVRRQVDKLNMLRRRVNAY >Mature_146_residues GEEIGLVEIVNEQWKAEVSDLLQQETDRLKALARAEVDDFWVTHYKVRENEPFKDWGLLGVRIRDFKYGFGIEWYINSFH GQRGKRVVFSKGLRISKTKLRYAFLDCQGLAKEWELALAMEKEEFFSDVRRQVDKLNMLRRRVNAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17509; Mature: 17378
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEEIGLVEIVNEQWKAEVSDLLQQETDRLKALARAEVDDFWVTHYKVRENEPFKDWGLL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCEE GVRIRDFKYGFGIEWYINSFHGQRGKRVVFSKGLRISKTKLRYAFLDCQGLAKEWELALA EEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEHHHHHEEEECCHHHHHHHHHHHH MEKEEFFSDVRRQVDKLNMLRRRVNAY HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GEEIGLVEIVNEQWKAEVSDLLQQETDRLKALARAEVDDFWVTHYKVRENEPFKDWGLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCEE GVRIRDFKYGFGIEWYINSFHGQRGKRVVFSKGLRISKTKLRYAFLDCQGLAKEWELALA EEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEHHHHHEEEECCHHHHHHHHHHHH MEKEEFFSDVRRQVDKLNMLRRRVNAY HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA