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The map label for this gene is dapB [H]

Identifier: 120597831

GI number: 120597831

Start: 1143385

End: 1144197

Strand: Direct

Name: dapB [H]

Synonym: Sputw3181_1001

Alternate gene names: 120597831

Gene position: 1143385-1144197 (Clockwise)

Preceding gene: 120597830

Following gene: 120597832

Centisome position: 24.28

GC content: 49.08

Gene sequence:

>813_bases
ATGGGTGGACAAGTGAGAGTTGCAATCGTCGGTGCGGGTGGTCGCATGGGACGCACTCTTATTGAGGCGGCTTACCATCA
AGAGCACATTCTTCTGGGCGCGGCAATAGAACGTGCAGGCTCAAGTCTAGTGGGTATCGATGCGGGTGAGTTGGCGGGCG
TGGGTAAGTTGAATGTCATCATTATGGATTCGCTTGATTATGCGACTGATGACTTTGATGTACTGATTGATTTCACCGCA
CCAGACGCCAGTATTGTCCATTTAGATTGGTGTGTTCGCCATAAGAAAGCCATGGTGATCGGCACAACGGGTTTCAATCA
AGCTCAAAAAATACAGATTAATGCCTTTGCCGAGCAAACACCTGTAGTCATGGCGCCAAATATGTCAGTCGGTGTCAACC
TAATGTGGAAATTGCTTGAACTGGCCGCAGAGGTCATGGGCGATTATACCGATATCGAAATAATCGAAGGTCATCACAGA
CATAAAAAAGATGCGCCATCGGGTACAGCTCTGAAAATGGGTGAGGTGATTGCTAAAACCTTAGGTCGCGATCTGGAGAA
ATGTGCAGTGTATGGCCGCGAAGGAATTACCGGTGAACGTGATCGTGAGACTATCGGTTTTGCGACCATTCGTGCTGGCG
ACTTAGTGGGTGAGCATACTGCGATGTTTGCCGATATCGGTGAGCGTTTAGAGATCACCCATAAGGCGTCGAGTCGTATG
ACCTTTGCTAACGGTGCCATGCGCGCAGCCCGTTGGGTCGTGGAGCAAAAACCGGGCTTGTATGATATGCAGCAGGTTTT
AGGTTTGAATTAA

Upstream 100 bases:

>100_bases
TGAAGTTGAGTTGTTAGACATCGTCTAATGTGATTGAAACGCCTAAGCCTGTCTTAGGCGTTTTCTTATGGGATAGATGA
ACCAGTTTGAGGAGAGTGAA

Downstream 100 bases:

>100_bases
TTCATATTAAAAAACGCCGATATGGCGTTTTTTTTTGCACCCAGTTACCAATGGGTGGACGGTTTCGCGTTTTTCCTGTA
AACTCGCTGGAATTTGTCAA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MGGQVRVAIVGAGGRMGRTLIEAAYHQEHILLGAAIERAGSSLVGIDAGELAGVGKLNVIIMDSLDYATDDFDVLIDFTA
PDASIVHLDWCVRHKKAMVIGTTGFNQAQKIQINAFAEQTPVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHR
HKKDAPSGTALKMGEVIAKTLGRDLEKCAVYGREGITGERDRETIGFATIRAGDLVGEHTAMFADIGERLEITHKASSRM
TFANGAMRAARWVVEQKPGLYDMQQVLGLN

Sequences:

>Translated_270_residues
MGGQVRVAIVGAGGRMGRTLIEAAYHQEHILLGAAIERAGSSLVGIDAGELAGVGKLNVIIMDSLDYATDDFDVLIDFTA
PDASIVHLDWCVRHKKAMVIGTTGFNQAQKIQINAFAEQTPVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHR
HKKDAPSGTALKMGEVIAKTLGRDLEKCAVYGREGITGERDRETIGFATIRAGDLVGEHTAMFADIGERLEITHKASSRM
TFANGAMRAARWVVEQKPGLYDMQQVLGLN
>Mature_269_residues
GGQVRVAIVGAGGRMGRTLIEAAYHQEHILLGAAIERAGSSLVGIDAGELAGVGKLNVIIMDSLDYATDDFDVLIDFTAP
DASIVHLDWCVRHKKAMVIGTTGFNQAQKIQINAFAEQTPVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHRH
KKDAPSGTALKMGEVIAKTLGRDLEKCAVYGREGITGERDRETIGFATIRAGDLVGEHTAMFADIGERLEITHKASSRMT
FANGAMRAARWVVEQKPGLYDMQQVLGLN

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=67.0411985018727, Blast_Score=349, Evalue=9e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29202; Mature: 29071

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGQVRVAIVGAGGRMGRTLIEAAYHQEHILLGAAIERAGSSLVGIDAGELAGVGKLNVI
CCCEEEEEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHCCCCEEECCCHHHCCCCEEEEE
IMDSLDYATDDFDVLIDFTAPDASIVHLDWCVRHKKAMVIGTTGFNQAQKIQINAFAEQT
EEECCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCCCEEEEEEEECCCC
PVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHRHKKDAPSGTALKMGEVIAKT
CEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
LGRDLEKCAVYGREGITGERDRETIGFATIRAGDLVGEHTAMFADIGERLEITHKASSRM
HCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCE
TFANGAMRAARWVVEQKPGLYDMQQVLGLN
EEHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
GGQVRVAIVGAGGRMGRTLIEAAYHQEHILLGAAIERAGSSLVGIDAGELAGVGKLNVI
CCEEEEEEEECCCHHHHHHHHHHHHHHHEEEHHHHHHCCCCEEECCCHHHCCCCEEEEE
IMDSLDYATDDFDVLIDFTAPDASIVHLDWCVRHKKAMVIGTTGFNQAQKIQINAFAEQT
EEECCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCCCEEEEEEEECCCC
PVVMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHRHKKDAPSGTALKMGEVIAKT
CEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
LGRDLEKCAVYGREGITGERDRETIGFATIRAGDLVGEHTAMFADIGERLEITHKASSRM
HCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCE
TFANGAMRAARWVVEQKPGLYDMQQVLGLN
EEHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA