| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597809
Identifier: 120597809
GI number: 120597809
Start: 1114141
End: 1114671
Strand: Direct
Name: 120597809
Synonym: Sputw3181_0979
Alternate gene names: NA
Gene position: 1114141-1114671 (Clockwise)
Preceding gene: 120597807
Following gene: 120597810
Centisome position: 23.66
GC content: 39.92
Gene sequence:
>531_bases ATGTCTGTTGCTCTAAATACATTTAAGCGTGCAATTGGTGATGCGCGAGTATTAATCGAATGCTATGACAACCTTAATGT TGGTCAAGGAAAGGCTGTTCCAGAGGCACTGAAAAGAGCCGCTTTGATCATGACTATGACGGCTTGGGAAACCTATGTAG AAGATGTTGCTACAGAACTTTTCAACAACAAGTTTGGTGCACTAAAAGGGTGTCAAATTGGAAACTTTATGGAGCAGCAG TTTTCTACTCGCTTGAAAATGTTTCATAACCCAGACTCTGCTAAAACGAAGCAAATTTTTGAAGAGTTTTTCGGGATTGA TGTTACAGAGCATTGGAAATGGCCGAATTATATACCTAAACAAGCGAGAGAAACCCTTAATACTTGGCTCAAAAAGCGTG GAGATGCGGTACACCGTGCTCAAGTTGAAATTGGTGTACCTCAAATCATAAAACGTGATGAAGTGGATAAATGTATTCGG TTTATTACTGAATTGGTGACCGCTACAGATAAAGCATTAGGGTCAGATTAG
Upstream 100 bases:
>100_bases CGCAGGGGATTGGCGTAACTCTTGGCATTAGTGTTTATTCATAATTTTTATTAAAAGTCAGATAGTTATTAATATAACTG CTATTTAGCTAAGGAATTTA
Downstream 100 bases:
>100_bases ATAGGTTTTAATAAATTTAAATTTACTTTGGATTATTTGATGCAAAAAATAAAAGTAGAAGGTCTTAAGTCCCTTAGGGA TAGTGGTGACTTTGAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQ FSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIR FITELVTATDKALGSD
Sequences:
>Translated_176_residues MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQ FSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIR FITELVTATDKALGSD >Mature_175_residues SVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQF STRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRF ITELVTATDKALGSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20072; Mature: 19941
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATEL CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNNKFGALKGCQIGNFMEQQFSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPK HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHH QARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRFITELVTATDKALGSD HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATEL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNNKFGALKGCQIGNFMEQQFSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPK HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHH QARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRFITELVTATDKALGSD HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA