| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597810
Identifier: 120597810
GI number: 120597810
Start: 1114711
End: 1116261
Strand: Direct
Name: 120597810
Synonym: Sputw3181_0980
Alternate gene names: NA
Gene position: 1114711-1116261 (Clockwise)
Preceding gene: 120597809
Following gene: 120597811
Centisome position: 23.68
GC content: 30.43
Gene sequence:
>1551_bases ATGCAAAAAATAAAAGTAGAAGGTCTTAAGTCCCTTAGGGATAGTGGTGACTTTGAATTAAAGAAAATTAATATACTTGT TGGAAACAATAGTTCGGGTAAAAGTACTTTTCTAAGGATATTTCCATTGCTCAGGCAAAGTGTTGAAAAGAAAACTCGAG GGCCTATACTGTGGAATGGTTTATATATTGATTTTGGTTCTTTTGATACAGCAATTCATAAAAAATTTTTTAATGGTGAA GTGAAGAATGAGGATGAACTATTTTTTACATTCCAACTTTCTTATAATAGGAAAAAGTATCATCACAGTTTTATTAATGA AGAACCAGTGGAGTTGATATGTAAAATAGGCATGATGAGGTCTAATAGTGGTTTAAGTTGTTATACGGCAAGTTATCAAG TTAAAATGTATAATCATACGATTTTTTTTAAGTTTGATGAGGATGGTGTGATTACTGATATTTCATCTGATAGGTTGTCA TGGCCGTTAAAAAAACATGATTTAAAGTATCAGATAACTGATACTGATAATTTACTTCCGATTTTAATATCACCTTCTTC AGGGTTGGTTGATGCAAAAGGCAAGCAAATAAGTACAGCATTATTCAATCAAGTTGTTCAGCTTTTTAAAAACTACTCAG GTAGTTCGAGTAGTAACAAATTGCAAGCTATGGCTACAAGATTTTTACGAAATTCAGTTAATGATAATAATAAATTAGCT TTGTTAAGGAAAATGAACTCAACTGCAAAGTGGGAAAAAGAAACATTAAGTTGGGATGTTAATTCAAAAAAGTTCAGATT TATATCTGGTTTGGCTGATCTTTATTATCTTATAGAGAATAGTGCAAATATAAATGATTCTATGACCAATGAGTTGTTAG GCGTTAGATATATTGCACCATTAAGAACTTCAACGGCAAGATATTATAGGCATCAAGATTTAAGTATCGACGAGTTAGAC CATCGTGGGGATAATATAGGTATGTTTATATCTAATATTACTGGTAAGTGGAGGGAGGAACTTAATAAGTGGACAAAAAG TGAATTTGGTTTTGTTATAAATGTAGATTTGAACTCTAATCATATATCAATTAATCTTCAGTATGCCGATTCAGATTTGA GTGATAATATTTCTGATATGGGATTTGGTTTTTCACAAGTGTTACCTATTATTATTCAATTATGGGCAGTATCATCTGGA TATGAAAATTCAAAAAGAAGTAGAAAAATAAATAGTTATATATTTGCGATTGAGCAACCTGAGTTACATTTGCATCCTAA GATGCAGGCGTCGCTTTCAATTGTATTCATAAATGCAATTGAACTTGCAAATAATAATGGTATCGAACTTAAATTAATTA TAGAAACTCATAGTGAATCAATAATATCTAAAATGGGTAATCTAATATCTAAAGGGAAAATCGCTAATGATATGATAGGG GTTTCCCTTTTTGAACAAGATCGAGAAAGTCGAGAGACTAAAATAATTTCTGCAAATTTTGACCAAAACGGTTTTCTTAA TAACTGGCCATTAGGTTTTTTTGATTATTAA
Upstream 100 bases:
>100_bases ATGTATTCGGTTTATTACTGAATTGGTGACCGCTACAGATAAAGCATTAGGGTCAGATTAGATAGGTTTTAATAAATTTA AATTTACTTTGGATTATTTG
Downstream 100 bases:
>100_bases TAATATGATTATAAAACTAGATAAATCGATAGTCGAGTCGGTGACTAAAAATCCAGAATCACAATATTTATTACTTTTTT TAGAAAAATTAGCGCAAACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MQKIKVEGLKSLRDSGDFELKKINILVGNNSSGKSTFLRIFPLLRQSVEKKTRGPILWNGLYIDFGSFDTAIHKKFFNGE VKNEDELFFTFQLSYNRKKYHHSFINEEPVELICKIGMMRSNSGLSCYTASYQVKMYNHTIFFKFDEDGVITDISSDRLS WPLKKHDLKYQITDTDNLLPILISPSSGLVDAKGKQISTALFNQVVQLFKNYSGSSSSNKLQAMATRFLRNSVNDNNKLA LLRKMNSTAKWEKETLSWDVNSKKFRFISGLADLYYLIENSANINDSMTNELLGVRYIAPLRTSTARYYRHQDLSIDELD HRGDNIGMFISNITGKWREELNKWTKSEFGFVINVDLNSNHISINLQYADSDLSDNISDMGFGFSQVLPIIIQLWAVSSG YENSKRSRKINSYIFAIEQPELHLHPKMQASLSIVFINAIELANNNGIELKLIIETHSESIISKMGNLISKGKIANDMIG VSLFEQDRESRETKIISANFDQNGFLNNWPLGFFDY
Sequences:
>Translated_516_residues MQKIKVEGLKSLRDSGDFELKKINILVGNNSSGKSTFLRIFPLLRQSVEKKTRGPILWNGLYIDFGSFDTAIHKKFFNGE VKNEDELFFTFQLSYNRKKYHHSFINEEPVELICKIGMMRSNSGLSCYTASYQVKMYNHTIFFKFDEDGVITDISSDRLS WPLKKHDLKYQITDTDNLLPILISPSSGLVDAKGKQISTALFNQVVQLFKNYSGSSSSNKLQAMATRFLRNSVNDNNKLA LLRKMNSTAKWEKETLSWDVNSKKFRFISGLADLYYLIENSANINDSMTNELLGVRYIAPLRTSTARYYRHQDLSIDELD HRGDNIGMFISNITGKWREELNKWTKSEFGFVINVDLNSNHISINLQYADSDLSDNISDMGFGFSQVLPIIIQLWAVSSG YENSKRSRKINSYIFAIEQPELHLHPKMQASLSIVFINAIELANNNGIELKLIIETHSESIISKMGNLISKGKIANDMIG VSLFEQDRESRETKIISANFDQNGFLNNWPLGFFDY >Mature_516_residues MQKIKVEGLKSLRDSGDFELKKINILVGNNSSGKSTFLRIFPLLRQSVEKKTRGPILWNGLYIDFGSFDTAIHKKFFNGE VKNEDELFFTFQLSYNRKKYHHSFINEEPVELICKIGMMRSNSGLSCYTASYQVKMYNHTIFFKFDEDGVITDISSDRLS WPLKKHDLKYQITDTDNLLPILISPSSGLVDAKGKQISTALFNQVVQLFKNYSGSSSSNKLQAMATRFLRNSVNDNNKLA LLRKMNSTAKWEKETLSWDVNSKKFRFISGLADLYYLIENSANINDSMTNELLGVRYIAPLRTSTARYYRHQDLSIDELD HRGDNIGMFISNITGKWREELNKWTKSEFGFVINVDLNSNHISINLQYADSDLSDNISDMGFGFSQVLPIIIQLWAVSSG YENSKRSRKINSYIFAIEQPELHLHPKMQASLSIVFINAIELANNNGIELKLIIETHSESIISKMGNLISKGKIANDMIG VSLFEQDRESRETKIISANFDQNGFLNNWPLGFFDY
Specific function: Unknown
COG id: COG4938
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59050; Mature: 59050
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKIKVEGLKSLRDSGDFELKKINILVGNNSSGKSTFLRIFPLLRQSVEKKTRGPILWNG CCCEEHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE LYIDFGSFDTAIHKKFFNGEVKNEDELFFTFQLSYNRKKYHHSFINEEPVELICKIGMMR EEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCCHHHHHHHHCCEE SNSGLSCYTASYQVKMYNHTIFFKFDEDGVITDISSDRLSWPLKKHDLKYQITDTDNLLP CCCCCEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEE ILISPSSGLVDAKGKQISTALFNQVVQLFKNYSGSSSSNKLQAMATRFLRNSVNDNNKLA EEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE LLRKMNSTAKWEKETLSWDVNSKKFRFISGLADLYYLIENSANINDSMTNELLGVRYIAP EEEECCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEEECC LRTSTARYYRHQDLSIDELDHRGDNIGMFISNITGKWREELNKWTKSEFGFVINVDLNSN CCHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC HISINLQYADSDLSDNISDMGFGFSQVLPIIIQLWAVSSGYENSKRSRKINSYIFAIEQP EEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCEEEEEEEEEECC ELHLHPKMQASLSIVFINAIELANNNGIELKLIIETHSESIISKMGNLISKGKIANDMIG CEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHH VSLFEQDRESRETKIISANFDQNGFLNNWPLGFFDY HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQKIKVEGLKSLRDSGDFELKKINILVGNNSSGKSTFLRIFPLLRQSVEKKTRGPILWNG CCCEEHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE LYIDFGSFDTAIHKKFFNGEVKNEDELFFTFQLSYNRKKYHHSFINEEPVELICKIGMMR EEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCCHHHHHHHHCCEE SNSGLSCYTASYQVKMYNHTIFFKFDEDGVITDISSDRLSWPLKKHDLKYQITDTDNLLP CCCCCEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEE ILISPSSGLVDAKGKQISTALFNQVVQLFKNYSGSSSSNKLQAMATRFLRNSVNDNNKLA EEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE LLRKMNSTAKWEKETLSWDVNSKKFRFISGLADLYYLIENSANINDSMTNELLGVRYIAP EEEECCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCEEEECC LRTSTARYYRHQDLSIDELDHRGDNIGMFISNITGKWREELNKWTKSEFGFVINVDLNSN CCHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC HISINLQYADSDLSDNISDMGFGFSQVLPIIIQLWAVSSGYENSKRSRKINSYIFAIEQP EEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCEEEEEEEEEECC ELHLHPKMQASLSIVFINAIELANNNGIELKLIIETHSESIISKMGNLISKGKIANDMIG CEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHH VSLFEQDRESRETKIISANFDQNGFLNNWPLGFFDY HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA