| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597519
Identifier: 120597519
GI number: 120597519
Start: 766404
End: 768227
Strand: Direct
Name: 120597519
Synonym: Sputw3181_0688
Alternate gene names: NA
Gene position: 766404-768227 (Clockwise)
Preceding gene: 120597518
Following gene: 120597520
Centisome position: 16.28
GC content: 44.96
Gene sequence:
>1824_bases ATGGGTGTCAGATTAGTACTTAAATTAGTACCTAGATTAGTAACGAGATTGACTCCACTAGGCTTAGGCCTGACTGTGCT TGGGTGCGCCTTAGTGGGGAGCTTTTATTCCCCTCAGTCCTTTGCCTCTATTTGGGATTTATTTACCAATAAGCGAGGAG TGAGTCAGACAAGTGTCCCCAAGGACAGCCCTCGTATTGAGCTCGTTGGCTCGCTTCCCGCTGATACTGAGCTAGAGCTT ATCGGTTTTTATTATTCATCAATTTGCACCGAGAAAGAGATGTATTTCCCCAGTGGTGATATCGCTAATCCCCAGTGGCG CACCAAAGGTACGACTTCTCAATTGCGGCAAGTGGTCACCAGTTTGCACAGTGCCAGTCATTTTACCCAATCTGTTGCGT TGCAGGGCGGAGGGTCATGTGAGTGGCAGCTGACTAACATTCAATTGAATATGTCACTTCTGCCCAGTCATCGCTTGTGG CAGGAAGCGCAATCCTTGGAAAAGCAGTATTTAGCTGAGTTACCTGTCGCCAAGGTGAAAGATGAAGCCCTTGAAAAAGA TGCTTTTAAGCAGTCTTTTGACTTGATACCCACCTTAAAGGAAGCTGATGCGGCCAGCGTTGATAGCAATGACGCCACTA TCTCCTTTTCACCAATTTATTATCCTATTTACAGTTATGCCCCCGAGGATAAGCAGCCCTTTGATGTTGGGCTGAAAAGC AGTTTGCAGCGCGAGGTTTCTGACCGATGGAGTTTGCAACACTCGAGGCGTATCCGTTTAACCGATGAACGGGTAACACG GGTGAATTTTACCCCTCACATTGCTGAAGATTATGCTGTGAATATCCATATCTTGGACAGAAAAGCCAAGGTAAGTTATC CCGATGGCACCGAGTTTACCTACATCAAGGCCGATTTACGGCTTTATCCTTACGATTCTGCAAAATCCCGCTTCAACAGC TTACAGCGCAGTGCGCGTCTTGAAGATAAAAGACAGTTAGCCAAGATTTACGATTCAGGCATTGAGCATGTGTTTAAAGG GGATAAAGCCAAGGCTGAAGTCTTGTATCGCGAATTGGGTGAGGCAGGGGATATGGAATCAATCAACTGGCTTAGAGAAC GGGCTCGTTGGGGCTACATTAAAGATGGCCAGTACTGGTTAGAGCGCGCTGCTAAGCTTGGCGATATTCAAGCTCAACTG GAGTTAATTAATCAACCCTTATCCGTCATTCCTCTGGGTAAAGTGAATACTGGCCAAGCAAAAATCCGTGAGCAGCAAGC ATGGCAAGCGTTAACTGAACTGACTAAGCAGGGAATACCTCAAGCCGTCAGCACGATGGCGTATTATCAAGTGTTTTCTT GCTCGCCCTATTTTGATACCACCGCAGCGCTGGATAATTATCGTAAAAGTGTTAAAACTCAACCTGATTTAGCCCAGGGC GCTGCTGAAACCTATTATTACTTTAAAGAGGATTTTAAACAGGCCGAGGAGTTTTGGGATATTGCCGCTGAGCAGGATCT ATATAGTGCTGCTGAATTTGCCAATATTTTAATGACAGATAAATATAAAAATGTGGCTAAAGCACGATATTTACTAGAGA AAGTCGCTAATTACGGTGCTGAACAAGGTCTTCAAAATAACATTATGGGTACGGCGTATTTTCAATTGGCGACCTTACTT GAGAATGCAGATAGTGGGGATAAAGATCTTGGTCGTGCGCTCGCCCTTTACCAGATGAGTATTGATCTTGCTGCAGGTTT TTCAAATGATTATGAAACTCAAGCTAAGGCGAGAGTGCAAGCACTACAAAATTTATCGAGATAG
Upstream 100 bases:
>100_bases TTCGCTGACCAGTTTTGAATTGAGTCGGCAATTGTGTAGACTCCGCTAGGTTTATGGCGTGAATAGCGTAAAGACTCATC AGCAATGAAAGACTGGTATT
Downstream 100 bases:
>100_bases CGAATAAAAGTGGTAATCGGGTTTGAAATTGCGCTAGCTTAGCCCCAATAACTTCCAGTCAGGTCTTTTGTATCGAATAA ATATTGTTCCTCTCATTACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MGVRLVLKLVPRLVTRLTPLGLGLTVLGCALVGSFYSPQSFASIWDLFTNKRGVSQTSVPKDSPRIELVGSLPADTELEL IGFYYSSICTEKEMYFPSGDIANPQWRTKGTTSQLRQVVTSLHSASHFTQSVALQGGGSCEWQLTNIQLNMSLLPSHRLW QEAQSLEKQYLAELPVAKVKDEALEKDAFKQSFDLIPTLKEADAASVDSNDATISFSPIYYPIYSYAPEDKQPFDVGLKS SLQREVSDRWSLQHSRRIRLTDERVTRVNFTPHIAEDYAVNIHILDRKAKVSYPDGTEFTYIKADLRLYPYDSAKSRFNS LQRSARLEDKRQLAKIYDSGIEHVFKGDKAKAEVLYRELGEAGDMESINWLRERARWGYIKDGQYWLERAAKLGDIQAQL ELINQPLSVIPLGKVNTGQAKIREQQAWQALTELTKQGIPQAVSTMAYYQVFSCSPYFDTTAALDNYRKSVKTQPDLAQG AAETYYYFKEDFKQAEEFWDIAAEQDLYSAAEFANILMTDKYKNVAKARYLLEKVANYGAEQGLQNNIMGTAYFQLATLL ENADSGDKDLGRALALYQMSIDLAAGFSNDYETQAKARVQALQNLSR
Sequences:
>Translated_607_residues MGVRLVLKLVPRLVTRLTPLGLGLTVLGCALVGSFYSPQSFASIWDLFTNKRGVSQTSVPKDSPRIELVGSLPADTELEL IGFYYSSICTEKEMYFPSGDIANPQWRTKGTTSQLRQVVTSLHSASHFTQSVALQGGGSCEWQLTNIQLNMSLLPSHRLW QEAQSLEKQYLAELPVAKVKDEALEKDAFKQSFDLIPTLKEADAASVDSNDATISFSPIYYPIYSYAPEDKQPFDVGLKS SLQREVSDRWSLQHSRRIRLTDERVTRVNFTPHIAEDYAVNIHILDRKAKVSYPDGTEFTYIKADLRLYPYDSAKSRFNS LQRSARLEDKRQLAKIYDSGIEHVFKGDKAKAEVLYRELGEAGDMESINWLRERARWGYIKDGQYWLERAAKLGDIQAQL ELINQPLSVIPLGKVNTGQAKIREQQAWQALTELTKQGIPQAVSTMAYYQVFSCSPYFDTTAALDNYRKSVKTQPDLAQG AAETYYYFKEDFKQAEEFWDIAAEQDLYSAAEFANILMTDKYKNVAKARYLLEKVANYGAEQGLQNNIMGTAYFQLATLL ENADSGDKDLGRALALYQMSIDLAAGFSNDYETQAKARVQALQNLSR >Mature_606_residues GVRLVLKLVPRLVTRLTPLGLGLTVLGCALVGSFYSPQSFASIWDLFTNKRGVSQTSVPKDSPRIELVGSLPADTELELI GFYYSSICTEKEMYFPSGDIANPQWRTKGTTSQLRQVVTSLHSASHFTQSVALQGGGSCEWQLTNIQLNMSLLPSHRLWQ EAQSLEKQYLAELPVAKVKDEALEKDAFKQSFDLIPTLKEADAASVDSNDATISFSPIYYPIYSYAPEDKQPFDVGLKSS LQREVSDRWSLQHSRRIRLTDERVTRVNFTPHIAEDYAVNIHILDRKAKVSYPDGTEFTYIKADLRLYPYDSAKSRFNSL QRSARLEDKRQLAKIYDSGIEHVFKGDKAKAEVLYRELGEAGDMESINWLRERARWGYIKDGQYWLERAAKLGDIQAQLE LINQPLSVIPLGKVNTGQAKIREQQAWQALTELTKQGIPQAVSTMAYYQVFSCSPYFDTTAALDNYRKSVKTQPDLAQGA AETYYYFKEDFKQAEEFWDIAAEQDLYSAAEFANILMTDKYKNVAKARYLLEKVANYGAEQGLQNNIMGTAYFQLATLLE NADSGDKDLGRALALYQMSIDLAAGFSNDYETQAKARVQALQNLSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68524; Mature: 68393
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVRLVLKLVPRLVTRLTPLGLGLTVLGCALVGSFYSPQSFASIWDLFTNKRGVSQTSVP CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC KDSPRIELVGSLPADTELELIGFYYSSICTEKEMYFPSGDIANPQWRTKGTTSQLRQVVT CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SLHSASHFTQSVALQGGGSCEWQLTNIQLNMSLLPSHRLWQEAQSLEKQYLAELPVAKVK HHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHH DEALEKDAFKQSFDLIPTLKEADAASVDSNDATISFSPIYYPIYSYAPEDKQPFDVGLKS HHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCEEEEHHCCCCCCCCCCHHHHHH SLQREVSDRWSLQHSRRIRLTDERVTRVNFTPHIAEDYAVNIHILDRKAKVSYPDGTEFT HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE YIKADLRLYPYDSAKSRFNSLQRSARLEDKRQLAKIYDSGIEHVFKGDKAKAEVLYRELG EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC EAGDMESINWLRERARWGYIKDGQYWLERAAKLGDIQAQLELINQPLSVIPLGKVNTGQA CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH KIREQQAWQALTELTKQGIPQAVSTMAYYQVFSCSPYFDTTAALDNYRKSVKTQPDLAQG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH AAETYYYFKEDFKQAEEFWDIAAEQDLYSAAEFANILMTDKYKNVAKARYLLEKVANYGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EQGLQNNIMGTAYFQLATLLENADSGDKDLGRALALYQMSIDLAAGFSNDYETQAKARVQ HCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ALQNLSR HHHHCCC >Mature Secondary Structure GVRLVLKLVPRLVTRLTPLGLGLTVLGCALVGSFYSPQSFASIWDLFTNKRGVSQTSVP CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC KDSPRIELVGSLPADTELELIGFYYSSICTEKEMYFPSGDIANPQWRTKGTTSQLRQVVT CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SLHSASHFTQSVALQGGGSCEWQLTNIQLNMSLLPSHRLWQEAQSLEKQYLAELPVAKVK HHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHH DEALEKDAFKQSFDLIPTLKEADAASVDSNDATISFSPIYYPIYSYAPEDKQPFDVGLKS HHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCEEEEHHCCCCCCCCCCHHHHHH SLQREVSDRWSLQHSRRIRLTDERVTRVNFTPHIAEDYAVNIHILDRKAKVSYPDGTEFT HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE YIKADLRLYPYDSAKSRFNSLQRSARLEDKRQLAKIYDSGIEHVFKGDKAKAEVLYRELG EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC EAGDMESINWLRERARWGYIKDGQYWLERAAKLGDIQAQLELINQPLSVIPLGKVNTGQA CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH KIREQQAWQALTELTKQGIPQAVSTMAYYQVFSCSPYFDTTAALDNYRKSVKTQPDLAQG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH AAETYYYFKEDFKQAEEFWDIAAEQDLYSAAEFANILMTDKYKNVAKARYLLEKVANYGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EQGLQNNIMGTAYFQLATLLENADSGDKDLGRALALYQMSIDLAAGFSNDYETQAKARVQ HCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ALQNLSR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA