| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597509
Identifier: 120597509
GI number: 120597509
Start: 748770
End: 749612
Strand: Direct
Name: 120597509
Synonym: Sputw3181_0678
Alternate gene names: NA
Gene position: 748770-749612 (Clockwise)
Preceding gene: 120597508
Following gene: 120597510
Centisome position: 15.9
GC content: 47.09
Gene sequence:
>843_bases TTGGCCGCGTTAGGTTTTTCAGCGTGGTATCGCCGTGCGATAGCCAAAGGCAGTGCCGATGCGTGTGTTAACTTAGGTGC AAGTTATGAGCAGCGCCAGCAATATCAACAAGCCGAGGCTCAGTATTTAAGCTGTCTTCCTGACAACGAAAGTGCCTTGC TTTACCTTAATCTTGGTACGCTTTATTACAATGGGTTAGTTAAGCAAGATAAAGGCTTAGGCGGCCATTATTGGCTGTTA TCCGCTAAGCTCGATCCCTATGATAGCGATATTCAATATAACCTTGGCGTGTATTACCTCAATACCGAGCGCGACTTAGA CAAAGCCCGCTGCTACTTTAGCCAATGCAGTTGGCAAGAAAGCGAATGTGCCAACGTGTTATCGCATCCCTTATTAATTG GCCGCAGCGCCGAACAAGCGCATTGGCAAACATTGTGCCAAGGGAGCGCGGTCGAGCAGCGTCATCGGTTAGAAGACAGG GCCAAGCACTTGTTGCCCGTACCTGTGTATTTTGACGATGAAACAGCAGAGATTATGCTGCAAGTGCAATTGAGCGATAA AGGGTTACAGAGCATTACCGCCACGACCCAAAGCCGAGGGCTGTTGGAAAAAGCCTGCACTTGGTTAAATCGCCTGATTT GGGTGGATACTTTTTCGGGGGCGAATGCGCAAACTTATCTGCAGCTAAATCGTGGTACGTTAATATTACCCTTGGAGTGG CAATATCAAGGGGTGAGCTATCGTCTTGATGAATCATATGATCAGTGGCGTTGCTCAGTTAGTCAGCTTTCCTTCCTTAC GCAATATTTTTCAGCATATTCTGACTATATTTCAAGGCGATAA
Upstream 100 bases:
>100_bases CACAGCCAGTGCCAATTTCTGCCAAAAATCAACATCGTTTGCGCTGTTATCAAGGTAAAGCGCCTTGCCTAACACTGTTG CAGTTATATGAACAAAGTGA
Downstream 100 bases:
>100_bases ACTATTTTTGGTACGGCATAAGGTATTGATTTTGTGACTTAAAGTGCTTTAAGTACTATAGTGAAAGCTTATTTTATCTA AAACGTAGGTGTGCGCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MAALGFSAWYRRAIAKGSADACVNLGASYEQRQQYQQAEAQYLSCLPDNESALLYLNLGTLYYNGLVKQDKGLGGHYWLL SAKLDPYDSDIQYNLGVYYLNTERDLDKARCYFSQCSWQESECANVLSHPLLIGRSAEQAHWQTLCQGSAVEQRHRLEDR AKHLLPVPVYFDDETAEIMLQVQLSDKGLQSITATTQSRGLLEKACTWLNRLIWVDTFSGANAQTYLQLNRGTLILPLEW QYQGVSYRLDESYDQWRCSVSQLSFLTQYFSAYSDYISRR
Sequences:
>Translated_280_residues MAALGFSAWYRRAIAKGSADACVNLGASYEQRQQYQQAEAQYLSCLPDNESALLYLNLGTLYYNGLVKQDKGLGGHYWLL SAKLDPYDSDIQYNLGVYYLNTERDLDKARCYFSQCSWQESECANVLSHPLLIGRSAEQAHWQTLCQGSAVEQRHRLEDR AKHLLPVPVYFDDETAEIMLQVQLSDKGLQSITATTQSRGLLEKACTWLNRLIWVDTFSGANAQTYLQLNRGTLILPLEW QYQGVSYRLDESYDQWRCSVSQLSFLTQYFSAYSDYISRR >Mature_279_residues AALGFSAWYRRAIAKGSADACVNLGASYEQRQQYQQAEAQYLSCLPDNESALLYLNLGTLYYNGLVKQDKGLGGHYWLLS AKLDPYDSDIQYNLGVYYLNTERDLDKARCYFSQCSWQESECANVLSHPLLIGRSAEQAHWQTLCQGSAVEQRHRLEDRA KHLLPVPVYFDDETAEIMLQVQLSDKGLQSITATTQSRGLLEKACTWLNRLIWVDTFSGANAQTYLQLNRGTLILPLEWQ YQGVSYRLDESYDQWRCSVSQLSFLTQYFSAYSDYISRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32109; Mature: 31978
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALGFSAWYRRAIAKGSADACVNLGASYEQRQQYQQAEAQYLSCLPDNESALLYLNLGT CCCCCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECH LYYNGLVKQDKGLGGHYWLLSAKLDPYDSDIQYNLGVYYLNTERDLDKARCYFSQCSWQE HHHCCEEECCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCH SECANVLSHPLLIGRSAEQAHWQTLCQGSAVEQRHRLEDRAKHLLPVPVYFDDETAEIML HHHHHHHHCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEECCEEEECCCCEEEEE QVQLSDKGLQSITATTQSRGLLEKACTWLNRLIWVDTFSGANAQTYLQLNRGTLILPLEW EEEECCCCHHHHHHHHHHCHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCEEEEEEEE QYQGVSYRLDESYDQWRCSVSQLSFLTQYFSAYSDYISRR EECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AALGFSAWYRRAIAKGSADACVNLGASYEQRQQYQQAEAQYLSCLPDNESALLYLNLGT CCCCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECH LYYNGLVKQDKGLGGHYWLLSAKLDPYDSDIQYNLGVYYLNTERDLDKARCYFSQCSWQE HHHCCEEECCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCH SECANVLSHPLLIGRSAEQAHWQTLCQGSAVEQRHRLEDRAKHLLPVPVYFDDETAEIML HHHHHHHHCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEECCEEEECCCCEEEEE QVQLSDKGLQSITATTQSRGLLEKACTWLNRLIWVDTFSGANAQTYLQLNRGTLILPLEW EEEECCCCHHHHHHHHHHCHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCEEEEEEEE QYQGVSYRLDESYDQWRCSVSQLSFLTQYFSAYSDYISRR EECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA